Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0078 |
Symbol | |
ID | 4909721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 73027 |
End bp | 75153 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640123831 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001054984 |
Protein GI | 126458706 |
COG category | [R] General function prediction only |
COG ID | [COG1204] Superfamily II helicase |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.605857 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAGGTCT CTGAGCTTCC TCTGGACGCC AGGCTCATTG CCGTGCTTAA GGAGCGTGGG GTGGGGCGGC TGTTTCCGCC TCAGGTGGAG GCGGTGAGGG CCGGGATTTT TGACGGGAGG AGCGTCTTGT TATGTACGGC GACTGCCTCG GGGAAGTCGC TTTTGGCCGA GGTGGCGGCG GTCAAGGCGG GCTTGGAGGG GCGCATGGCG CTCTACGCTG TGCCCCTCAA GGCTCTTGCC TATGAGAAGC TTGTCCACTT CTCCTACTAC AGGGGGCTTG TGAAAGTGGG GGTGTCTACC GGCGACTTTG ACTCGGACGA CAGGCGGCTC CACGAGTTTG ACGTGGTGGT GGTTACGTAT GAGAAGTTGG ACAGCCTCCT GCGCCATAGG CCGAACTGGC TCGGGCTCGT GGGCGTCGTG GTGGTGGACG AGATTCACTA CCTGGGGGAC CCGAGGAGGG GGCCCGTCCT CGAGTCTATT GTGGCTAAGC TGAGGCACCT CGGCCTAAAA ACCCAGTTCA TCGGCTTGAG CGCCACTGTG GGGAACGCGG GGGAGGTGGC GGCGTGGCTT GGGGCTAGGC TTGTGGAGTC TAGCTGGCGG CCAGTGCCCC TCAGAGAGGG TGTGTACCAC GGCGGGGTGA TCCGCTTCTC CGACGGCTCC ATGCAACGCG TGAACGCGCC GGGGGACGCG GAGGTGGCCT TGGCTGTGGA CGCGGTGGCA GGCGGGGGCC AGGCCCTGGT CTTCACCAAC AGCAGGAGCT CCACCGTCAG ACTGGCCAAG GCCGTGGCGA AGGCCATGGA GGCGGCCGGC CTTGTGCCGC GGGGGGCCAA GGCGCTGGCC GAGGAGGTCC TCAAGGCGTC CTCTAGCAAG ATCATTGGCA GAGAGCTCGC CGACCTTGTG GCGAGGGGGG TGGCGTTCCA CAACGCGGGG CTTGAGCTAG AGGTGAGGAG GCTTGTGGAG GATGGGTTTA GGAGGGGCTT GCTCAAGGTG GTGGTGTCTA CCACGACTCT GGCGGCCGGG GTCAACCTCC CGGCGAGGCG TGTGGTGGTC GCCGACTACG AGCGCTTTGA CCCAGCGCTT GGCCGGGAGG AGATCCCCGT GCTTGAGTAT AGGCAGATGG CGGGGAGGGC GGGGAGGCCT GGCCTGGATC CATACGGCGA GGCTGTGCTT GTGGCGAGGA GCAAGGGGGA GGCGGAGTAC CTAATGGAGC GCTATGTGAG GGGGCAAGTG GAGGGGGTCC GCTCCCACAT CTTGGCTGAG CCCAACCTCA GGGCCCACGT GCTGGGCGCC GTGGGCGGGG GCTACGCCAA GTCTCTAGAC GACCTTGTGG ACTTCTTCTC CAACACCCTG GGCGCGGCGC AGATGAAGAC CTCGCTCAAG TTGTCTATCC TCAGGTCTAA GATCGGCGGC GTGGTGGAGG AGTTAGTGGA GTGGGGCTTC CTTGAGCGAG ACGGCGACTT TGTATATGCC ACGGAGCTTG GGAGACAGGT GGCTAGGCTT TACCTAGATC CAGAGGTGGC CGCCGGCTAC ATACGGCTGA TCAAGTCGCT GAGGGCGGGG AACGTGCCTG CCTACCTCTA CGTGGTCTTG ACAGCCCCCG ACTTCCCCAG GGTGAGGAGG GGCAGGGCGG ACAAGCGTGT GGTAGAGGGA ATCCTCGCGG CGTTGGATGT GGAGGAGGAC GAGGAGTTTG AGGACTTGGC CCGGACCGCG TCTATGCTCA TGGCGTGGAT TGAGGAAGTC GACGAGGACG TGATATATGA GAAGTTCGAC GTGGCTCCGG GCGATTTGAG GGTGTACGTG GATTTGTTCC AGTGGCTTGG CAACGCCGCG GCCAAGCTTG CGCGTCTCGT GGGCCGCGAG GAGCACGGGA AGAGGCTTGA GGTGGTCACG GCGAGGGTGG TGTACGGGGT GAGGGAGGAG CTCTTAGGCC TAGTGACCTC TCTCAGGGGG GTGGGGCGCG TCAGGGCCCG CACGCTCTAC AACTTTGGCT ACAGGACGCT TGAGGACATA GCCAGGGCTA CCGTTAGAGA GATTGCCTCG TTGCCGGGCT TTGGGGAAAA ACTGGCGGAG TCTGTGATTG AGCAGGCTAG GCAGATGCTG GCCGAGGGGC TACGGGGGGA GGTCTAG
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Protein sequence | MEVSELPLDA RLIAVLKERG VGRLFPPQVE AVRAGIFDGR SVLLCTATAS GKSLLAEVAA VKAGLEGRMA LYAVPLKALA YEKLVHFSYY RGLVKVGVST GDFDSDDRRL HEFDVVVVTY EKLDSLLRHR PNWLGLVGVV VVDEIHYLGD PRRGPVLESI VAKLRHLGLK TQFIGLSATV GNAGEVAAWL GARLVESSWR PVPLREGVYH GGVIRFSDGS MQRVNAPGDA EVALAVDAVA GGGQALVFTN SRSSTVRLAK AVAKAMEAAG LVPRGAKALA EEVLKASSSK IIGRELADLV ARGVAFHNAG LELEVRRLVE DGFRRGLLKV VVSTTTLAAG VNLPARRVVV ADYERFDPAL GREEIPVLEY RQMAGRAGRP GLDPYGEAVL VARSKGEAEY LMERYVRGQV EGVRSHILAE PNLRAHVLGA VGGGYAKSLD DLVDFFSNTL GAAQMKTSLK LSILRSKIGG VVEELVEWGF LERDGDFVYA TELGRQVARL YLDPEVAAGY IRLIKSLRAG NVPAYLYVVL TAPDFPRVRR GRADKRVVEG ILAALDVEED EEFEDLARTA SMLMAWIEEV DEDVIYEKFD VAPGDLRVYV DLFQWLGNAA AKLARLVGRE EHGKRLEVVT ARVVYGVREE LLGLVTSLRG VGRVRARTLY NFGYRTLEDI ARATVREIAS LPGFGEKLAE SVIEQARQML AEGLRGEV
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