Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0054 |
Symbol | |
ID | 4910203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 54370 |
End bp | 55371 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640123807 |
Product | H/ACA RNA-protein complex component Cbf5p |
Protein accession | YP_001054960 |
Protein GI | 126458682 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGTGCG GCAGTAGGGA GGTTTTTGTA AAACTGGAGG AGGGGACGAA TCCGCAGTGG GGCAAACCGC CGTCGAGTAG AAGCGCAGAG GAGCACATAC GGTACTCTTT TCTCATTTTA GACAAGCCCA GGGGGCCGAC TAGCCACGAG GTTGCGGCGT GGGTGAAGAA GATTTTGGGA GTGGAGAGGG CTGGGCACTC GGGCACTCTG GACCCGAAGG TGTCCGGTGT CCTTCCAGTG GCCGTGGCTG AGGGGACTAA GGTGCTTATG GCTTTGTCTA GGGCGGACAA GGTCTACATA GCCGTGGCCA AGTTCCACGG CGATGTAGAC GTAGAAAATC TGCGGAGGGT GTTGCAGGAG CTTCAGGGGG AGATCTACCA GAAGCCCCCG CTCCGCTCCG CGGTGAAGAG GCAACTTAGA ACGCGCCGGG TTTACTCCCT GGAGCTTTTG GAGCTTGACG GGAGGTACGC AGTGCTGAAA ATGCACGTGG AGGCCGGCAC CTATGCTAGA AAGCTTATCC ACGACTTGGG GGAAATCTTG GGGGTTGGGG CAAATATGAG GGAGCTCCGC CGCGTGGCGG TCTCGTGTTT TACAGAGGAC GAGGCCGTGA CTCTGCAGGA CTTGGCAGAC GCGTACTACA TTTGGAAGAA GTACGGCGAT GATACATATC TCAGGAGGGT GTTGCTCCCA ATAGAGGAGA TAGCGAGACC TCTGCCCAAG ATCTGGGTCC GCGACAGCGC CGTTGACGCC CTCTGCAACG GCGCCCCCCT CGCTGCACCC GGCGTGGCCA AGTTTGAACA CCCGTTTAGC CGCGGCGACT TAGTGGCCTA TTTTACGCTT AAGGGCGAGC TCATAGGCAT TGGAAGAGCG CTTGTCGACA GTGAGGAGGT TAAGAAAATG GAGAAGGGGC TTGTGGCGCG GACCGACCGG GTGGTCATGC CCCGCGGCAC CTATCCGCCC ATGTGGAGGC GAGGCGGTAA AAGCTTTAAA AGTGGCACCT AG
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Protein sequence | MKCGSREVFV KLEEGTNPQW GKPPSSRSAE EHIRYSFLIL DKPRGPTSHE VAAWVKKILG VERAGHSGTL DPKVSGVLPV AVAEGTKVLM ALSRADKVYI AVAKFHGDVD VENLRRVLQE LQGEIYQKPP LRSAVKRQLR TRRVYSLELL ELDGRYAVLK MHVEAGTYAR KLIHDLGEIL GVGANMRELR RVAVSCFTED EAVTLQDLAD AYYIWKKYGD DTYLRRVLLP IEEIARPLPK IWVRDSAVDA LCNGAPLAAP GVAKFEHPFS RGDLVAYFTL KGELIGIGRA LVDSEEVKKM EKGLVARTDR VVMPRGTYPP MWRRGGKSFK SGT
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