| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0048 |
|---|
| Symbol | |
|---|
| ID | 4910037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 50114 |
|---|
| End bp | 51001 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640123801 |
|---|
| Product | abortive infection protein |
|---|
| Protein accession | YP_001054954 |
|---|
| Protein GI | 126458676 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC CCGCCTCCGC AGTGCCGCTC TTCTTAGCCA CGGCGTATCT CACAGCCCTC
GTCCTCGACG TCGCCGCTCT AGAACTTGTC ACCCCGGCGG CCAGCTCGCC CACGGGGCTC
GCCGTGTGGG GGATTACAAG AATGTGGAGC GTGGCACTCG CAGTAGTCGT TGCTCTGTGG
GCCGAGGGGA GGCTGAGAGA GCTGAAGGAG ATAGTCGGCC TCTCGGGGAG GGTCCTCTTG
CCCTATTTCT TCGCTCCCCT CGTCGTCTAC GGGGCCTTGG GGATATACAT CGCGCTGGCG
GCCCCCCTAG GCCTCTTCCA ATTCCAGGCG TACATAGACG CAATAGCCAA CGCGATTAGG
CAATACCCAG TCCAAGACGC CGAGGCCTTG GCTAGAATCG TTGCGTATGC CCAAATCGCT
GGGGCCTACA TAGCCGCGGT TACAATAAAC GCCGTAGTGG CGCTGGGAGA GGAAATAGGT
TGGAGGGGCT ACCTCTTCCG CAGACTAGGC GGCGAGGCCA ATTTGCGCAA CGTAGTGATA
ATAGGCGTGG TTTGGGGGCT GTGGCACGCG TCGGCCATAC TGCTCCTAGG CTACAACTAC
TACTACAATA GGTGGCTGGG AGTGCCCCTC TTCACCGCGT TTACCACCGC CCTCACCTAC
CCCCTCCTCC TCTTCGCCAA GAACAGCGTC CTTCCCGCCG CGTCGCTACA CGGCGCGGTG
AATGCCCTCT GGCCCCTTAC AGTGGCCGCG AGCTATCTGC CCCCAGAGGC TAGAGAGCTG
TACCTCGGTA TCGGCGCCCT GGGCATAGCC GCTTGGGCTC TCACCTCACT AGCCCTATAC
GCCGCCTACG CCAAAATACG CTCAGCCAAG CAAAACGTGC CGACTTAG
|
|---|
| Protein sequence | MSKPASAVPL FLATAYLTAL VLDVAALELV TPAASSPTGL AVWGITRMWS VALAVVVALW
AEGRLRELKE IVGLSGRVLL PYFFAPLVVY GALGIYIALA APLGLFQFQA YIDAIANAIR
QYPVQDAEAL ARIVAYAQIA GAYIAAVTIN AVVALGEEIG WRGYLFRRLG GEANLRNVVI
IGVVWGLWHA SAILLLGYNY YYNRWLGVPL FTAFTTALTY PLLLFAKNSV LPAASLHGAV
NALWPLTVAA SYLPPEAREL YLGIGALGIA AWALTSLALY AAYAKIRSAK QNVPT
|
|---|
| |