| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0039 |
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| Symbol | |
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| ID | 4908550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 42958 |
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| End bp | 44709 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640123792 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001054945 |
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| Protein GI | 126458667 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTCG GCGAGTTGGC CAAGGTCTTA GCTGCCGTGG AGAGCACGAC GCAGCGGACC
ACCATGGTGA AGCTACTCAC CTCGCTCTTT AAAAAGGCCA AACCGGAGGA GATCGATAAA
ATTGTATACT TCATCCTGGG CGATTTGAGA CCCCCCTGGG AGGGGGTAGA GCTGGGTGTG
GCCGAGAAGC TCTGCATCCG CGCCATCTCA AAGGCCACCG GCCTCTCGGC CGCGGAGCTC
GAGGGGTGGT ACAAGAAGAG CGGAGACGTG GGCGAAGTCG CGAGGAGAGC CCTGGCGGCG
GGCAAGAGGC CCACTCTCCT GGCCTTCGCC CAGCAGAAGC CGCTGGAGGT GGCCGAGGTT
TACGACACCT TGCTCAAGGT GGCCAAGGCC GCGGGAGAGG GGGCCCAGGA CTTGAAGGTG
TCTCTCCTCT CCTCGCTCTT CTCCCGCGCC TCGCCCGAGG AGGCCAAGTA CATCGCCCGA
TTTGTAGTTG GGAAGCTCAG GCTGGGAGTA GCCGACATGA CTCTCATAGA GGCCCTCTCC
GAGGCCTTCG GCGTGTCTAA GGAGGGGCTT GAGAGAGCTT ACCACGTCTA CCCCGACCTA
GGCCGCCTGG CGAGACATGT GGCAGAGGGG AGGCCGCTGG AGGAGATAAA AATCACGCCG
GGGGTCCCTG TTCTCCCCAT GCTAGCCCAG CGCCTCTCCT CGGCGTCGGA GATCTTGGCG
AAGCTAGGCG GCACGGCCAT CTGCGAGTAC AAATACGACG GGGAGAGGGC CCAGATACAC
CTAAGAGAGG GCTCGGTGAA AATATTCAGC AGGAGGCTTG AGGACATTAC CCACGCATAC
CCCGACGTGG CCAAGGCCGT GAAAGAGGCG GTCAAGGCGA GGGAGGCCAT ACTGGAGGGC
GAAATTGTGG CAGTGGACCC AGACACCGGG GAGATGTTGC CATTCCAAGA GCTTATGCAC
CGGAAGCGGA AACACGACGT GGCTGAGGCA ATGGAGGCCT ACCCCGCAGT CCTCTACCTC
TTCGACCTCT TGTACGTAGA CGGGGAGGAT TTAACCACCC AGCCCCTCAT CTACAGGAGG
CTACGCCTAT CCGAGGTAGT AGAGGAGGGG GGAGACGTCT ACATAGCCAA GTGGGGAATG
TTCGACGGCG CGGAGGATGT GGACTTGTTC TTCCACGAGG CCGTCTCCCT GGGCACAGAG
GGCCTCATCT GCAAATCCCC CACTTCCACA TACGAGATGG GGGCCAGGGG CTGGAACTGG
ATTAAGTACA AGAGAGACTA CAGAAGCGAA ATGATAGACA CAGTAGACCT AGTGGTAGTG
GGCGCTTTCC ACGGCAGAGG AAAAAGGGCA GGCCTCTACG GGGCGTTTCT GCTGGCGGCC
TACGACCCCT CAACCGACAT GTTTTACACA GTGTGCAAAG TCGGTAGCGG ATTCACAGAC
GCAGACCTCC GCAGGATGTA CGACATGCTC CAGCCCCTCA AAATACCCCA CAGACATCCA
AGAGTAGTCT CCAAAATGCA GCCAGACGTC TGGTTCGTGC CCCAGGTGGT GATAGAGGTG
ATAGGCGCAG AGATCACCCT CTCACCCCTC CACACGTGTT GTATAGGCGC GGTGAAGCCC
GGCGTGGGGC TCGCCATTAG ATTCCCACGA TTCACCGGCC GCTACAGGAC AGACAAAAGG
CCAGAAGACG CCACAACCAC AAAAGAGCTC GTGGAAATGT ACCAACGCCA AAAGAAAGTA
CCAACCACCT AA
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| Protein sequence | MQFGELAKVL AAVESTTQRT TMVKLLTSLF KKAKPEEIDK IVYFILGDLR PPWEGVELGV
AEKLCIRAIS KATGLSAAEL EGWYKKSGDV GEVARRALAA GKRPTLLAFA QQKPLEVAEV
YDTLLKVAKA AGEGAQDLKV SLLSSLFSRA SPEEAKYIAR FVVGKLRLGV ADMTLIEALS
EAFGVSKEGL ERAYHVYPDL GRLARHVAEG RPLEEIKITP GVPVLPMLAQ RLSSASEILA
KLGGTAICEY KYDGERAQIH LREGSVKIFS RRLEDITHAY PDVAKAVKEA VKAREAILEG
EIVAVDPDTG EMLPFQELMH RKRKHDVAEA MEAYPAVLYL FDLLYVDGED LTTQPLIYRR
LRLSEVVEEG GDVYIAKWGM FDGAEDVDLF FHEAVSLGTE GLICKSPTST YEMGARGWNW
IKYKRDYRSE MIDTVDLVVV GAFHGRGKRA GLYGAFLLAA YDPSTDMFYT VCKVGSGFTD
ADLRRMYDML QPLKIPHRHP RVVSKMQPDV WFVPQVVIEV IGAEITLSPL HTCCIGAVKP
GVGLAIRFPR FTGRYRTDKR PEDATTTKEL VEMYQRQKKV PTT
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