Gene Pcal_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0038 
Symbol 
ID4908846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp42120 
End bp42929 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content54% 
IMG OID640123791 
Producthypothetical protein 
Protein accessionYP_001054944 
Protein GI126458666 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGGAGT TTAAGAGACT TCTCAAGCGG CTGGCGGAGG AGGATAGGGA GTTTCTCAGA 
GGGGTTCTGC TAGAGGCTAT TGGCGATAGT GGGGCTGAGG AGCTTGTGGA GACCCTGCTG
AGGAGCCCGA GGGCTAGGGC TAGGCTTGCC GCCGAGCTGG CGGCTATGAT CACAATACCG
CTCAACGTAG CCACAAAAGA CGACATCAAG GCCCTAGAGG CGAAAATGGC GACAAAGGAG
GATTTACAGC GCTTTGCCAC TAAAGAGGAC TTAGAAAGAT TTGCAACCAA GGAGGACATC
AAACGCTTGG AAGAGAGAAT GGCGACTAAG GACGACCTTA AGGCCTTGGA GACCAGAATG
GCCACAAAGG AGGACTTGGA ACGCTTTGCG ACTAAAGAGG ATATAAGGCG GCTGGAGAAT
AGGATGGCTA CTAAGGAGCA GTTTGAGTCT TTGGCAATCT CCGTCGAGGA GATGGCTAGG
GAGTTTGTAG AGTGGTTTTT AAAACAGAGG GGCATTGTGT GCTCCGCCCA ACGCCTCCTC
TTGGACGAAG AATACGAATT CGACGTCTAC TGCGCCGCCG GGGATGTGGC AGTCTTGGGA
GAAGCCAAGG TGAGATGCGG CCCCAACGAC GTAGAAAGAG TCGTGGCCAG GGTCGAGGAG
GCTGTGAGAA GGTGGCCCGA CAAGTTCCCG GGGCGGGTGG CCAAAGTTTT GTACTGCCAA
CTCGCGGCGC CTAAGGCAGT AGAAAAGGCG CGAGAGCTCG GGGTGTGGTT AATAGAGACA
AGGAGAGAGC TGACGCCGTT ACAATTATAA
 
Protein sequence
MEEFKRLLKR LAEEDREFLR GVLLEAIGDS GAEELVETLL RSPRARARLA AELAAMITIP 
LNVATKDDIK ALEAKMATKE DLQRFATKED LERFATKEDI KRLEERMATK DDLKALETRM
ATKEDLERFA TKEDIRRLEN RMATKEQFES LAISVEEMAR EFVEWFLKQR GIVCSAQRLL
LDEEYEFDVY CAAGDVAVLG EAKVRCGPND VERVVARVEE AVRRWPDKFP GRVAKVLYCQ
LAAPKAVEKA RELGVWLIET RRELTPLQL