Gene Pcal_0033 details

Gene Information

• Locus tag: Pcal_0033
• ID: 4909466
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 29959
• End bp: 31899
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640123786
• Product: hypothetical protein
• Protein accession: YP_001054939
• Protein GI: 126458661
• COG category: [R] General function prediction only
• COG ID: [COG3889] Predicted solute binding protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGACACCA AACCCTGGCT ACTACTAGCG TTAGCAGCCG CGTTAGTTGT AATATTCTAC 
TTGATGAATA CATCACAGAC TCCCACGGTG CCTACGCCGA CACCGACAAC TACTGCAACG 
GTGACCCCAA GCCCGACCAC CTCCACTACG CTGACGGCCA CGCCCACTGA GACGCCGAAG 
CCCACAGCCA CTGCTACTAC GACGACGGCA CCCAAGCCCA GCGCCGCGCC CGTGTATATC 
CCACGCCTCG AGGTAGAGCT GTCGGCGCCC CAGGCGGTGA ACACCACGAA GTTGCCCACG 
GCGGTGAATT ACACCGTGAC GTTGAGAAAC GTTGGAAACG GCACGGCGGT GGTGTACGTC 
TTTGGAAAAT ACGTGGAAGT CAAGCCGGGC GAGGTGGTTA AGTTAAACGC CACAGCCACG 
GCACAGGCGG CGGGCATACT CAAAATAGCA GTCGAAGTAA ACGGCACAGA GTACGCAAGG 
GAGGTCTACA TCTACTACTA CACACCGATC TTGGCGGCAG AACCCGCCTA CGTCGAAGTG 
AGAAAGTTAC CCACAAACGT CACCCTAAGC GTGGTGGTAA AAAACGTGGG CAACTGGACC 
GGGAGGCTCG GCCCCATAGA GATACCGCCC GGAGGCACAG CCGCAATAAA TATAACAGCG 
GCGGTCAACG CCACAGGCAC CTACTCTCTG CAAATAGGCG GCGTAGAGGT GCCCATAACC 
GTCGTGTACA AGGCGCCGAG CTTTGAAATA AAGACGGGCG GCCCCACGGA GACGGAGGCC 
CTCCCCGGGG AGAAGTACCC CGCCTGGCTG TGGATAAAAA ACGTGGGCAA CGCCACAGCC 
AAACTCTCCA TAGACGGCGA AGAAAGAGAG CTAGGGCCAG GCGACGCTGT CAATATCACA 
AAGTGGATAC AAGTAGACAA GGTAGGCATC TACAAAGCTG TGTTTAAGGT GGAGGGCGAC 
TTAAACACGA CGGCCGTGCA CCAGCTGTCC GCCAAGATAG TGGCCGTGAA AGTGGAGATG 
GTGTTGTGGA AGCCCGAGCT CAGGAGGGGC TGGCCGCCGC CCAACGGGGA GGATAGAACG 
TCACTGTTGC TTGAATCCAA GACTGCCGAA GTGCAGTGGG GGTACATAAT AACTTCAAAC 
GCCAGCAAGC GAACTGTCGT AGTATATGTT GAGGACGTTC AAGGCCGCGA CTATTTCACA 
ATACCGCCCA AAGGCTCCGT AGGCAGAAAT CTAACTGCCA CAGTCCAAGC GCCGGGGAGC 
ATAGCCGTCT GGGTAATCGT GAACGGCACT AAGTACACAT ACGTCATAAG TACACAACTT 
GTCCCGCCTA AGGTCACTAT AAGAGATGTC TCAAAAATAG AGTTTAGAGA CTCCAGAGAA 
ATTCTTGGTC TAGGGATAAA GTGTAGCGGA ATACCGATAG TGGGTACAAT ACAGCGTACA 
ATAGACATAG TGGAAGTTTC TGGAGTGTTG GCTTATACCA CAGACGGCAA GACCATAGAG 
GGTACTGTAA AGATCAGAAG CGTCGACGTA TACACAGGTA GCTACAGAGG TATCATCACT 
GGCACAAGCG GACGAGTAGA CATCGATGTG GACTTCATGG GAGGACACCA CGTAATTACT 
ACAAAGTTCC GGACGTCTCC GTTTGAAATA ACTGAGGTCC TAATAGACGG TGTCCCCGGG 
AAATGCGATA TACCAACTCA GCTGATACCT AGCATATTCC TCAGCGGAAA ACCCGCGGCT 
GACAATGAAT TGGCGACGCA GTACGCCTTT AGGCTAGTGT CTGCTTTTAA GAAGGGGGAC 
AGCGACGTGC CTCAGCGGGT CGAGTGGAAT GGAGAATACG TAGAGGTAGT AGACAAGGGA 
GGCAACGTGC TGAGGGTCTA CTTTGGACAG GGAGAAGTGG TCATAGAGGG GCCCCTCTCG 
GCCAGGCTGG TGATATCTTA G 

 

Protein sequence

MDTKPWLLLA LAAALVVIFY LMNTSQTPTV PTPTPTTTAT VTPSPTTSTT LTATPTETPK 
PTATATTTTA PKPSAAPVYI PRLEVELSAP QAVNTTKLPT AVNYTVTLRN VGNGTAVVYV 
FGKYVEVKPG EVVKLNATAT AQAAGILKIA VEVNGTEYAR EVYIYYYTPI LAAEPAYVEV 
RKLPTNVTLS VVVKNVGNWT GRLGPIEIPP GGTAAINITA AVNATGTYSL QIGGVEVPIT 
VVYKAPSFEI KTGGPTETEA LPGEKYPAWL WIKNVGNATA KLSIDGEERE LGPGDAVNIT 
KWIQVDKVGI YKAVFKVEGD LNTTAVHQLS AKIVAVKVEM VLWKPELRRG WPPPNGEDRT 
SLLLESKTAE VQWGYIITSN ASKRTVVVYV EDVQGRDYFT IPPKGSVGRN LTATVQAPGS 
IAVWVIVNGT KYTYVISTQL VPPKVTIRDV SKIEFRDSRE ILGLGIKCSG IPIVGTIQRT 
IDIVEVSGVL AYTTDGKTIE GTVKIRSVDV YTGSYRGIIT GTSGRVDIDV DFMGGHHVIT 
TKFRTSPFEI TEVLIDGVPG KCDIPTQLIP SIFLSGKPAA DNELATQYAF RLVSAFKKGD 
SDVPQRVEWN GEYVEVVDKG GNVLRVYFGQ GEVVIEGPLS ARLVIS