| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0030 |
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| Symbol | |
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| ID | 4908893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 22625 |
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| End bp | 24529 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640123783 |
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| Product | beta-lactamase domain-containing protein |
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| Protein accession | YP_001054936 |
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| Protein GI | 126458658 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1782] Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain |
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| TIGRFAM ID | [TIGR03675] arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTTATC TTGAGGTTGA GAGTAAGGTA AAGTCTATTC TCTCAGGGGT GGAGGTGGCC
AAGGTGAGTT TTGAAGGCCC AAACCTCTGT ATCTATGTCA GAAGGCCGTT GGACGTGGCT
TTTGACTTAG TCGGAGAAGT GGCTAAGGCG TTGAAAAAGA GGGTGGTTCT GAGGGCCGAC
GAGTCTAGCC GCCTGCCTGA GAAGAGGGCT AGGCAAGTGA TTTCGGAGGT GTTGGACGGG
GTTGAGGAGG TGGTGTTTGA GAAAAGTGGC GATGTGTATG TCTATCTCTC AAAGCCGGCG
AGGGGGGCCG AGCTTAGGGA GGCGGCCCGT GAAATTTTTG TAAAAACGGG ATGGAGGGCA
GTTATCGAGA GCGGCGTGCC GAGGGGCGGC GAGAAAATAC CTGCGCACGA GGTGCTTGCC
GTGAGACAGA TCTTCCACGG CGCTTATGAG CAGAGGAGGG AGCTCATGGA GAGACTTGCC
AGGTTTATTC ACCAAGAACC CGTGGTTAAA GAGGGGCCTA TCACCGTGAC CTTCCTCGGC
GGAGCCATGG AGGTGGGGCG GAGCGCCGTG CTTGTCAGCA CCGGCGAAAG CAACGTCTTG
CTCGACTGCG GCCTCAAGCC TGTCCAAGAC GATGAGGACT TCCCTCTGTT GGACATGCTG
GACTTAGACC GCCTAGACGC CGTCGTTTTA ACGCACGCCC ACATGGACCA CGTGGGCTGT
CTGCCCCTGT TGTATAAGTA CGGCTACCGC GGCCCAGTAT ACGCGACTGA CCCGACCAAG
TACCAGGCCT ACATCCTCTT GATGGACTAT GTGGAGTTGA AGGAGAGGGA GGGGGGCTTG
CCCAGCTTTT CGAGAGCCGA CGTGGAGGCT GTGATATATC ACACAATTAC GTTGGACTAC
GAGGAGGTGA CGGACATCAC GCCTGACATC AAGCTCACTT TCTACGACGC CGGCCACGAG
ATAGGCTCAG CGATGGCGCA CTTACACATT GGAAATGGGA GGTACAACAT ACTCTACACT
GGGGATTTCA AGTACGGTAA GACCAGGCTT TTGAACAGGG CTGTGAACAA GTTTAAGCGG
GTGGAGATGT TGATCATGGA GTCCACCTAC GGGGGTAGAG ACGACGTCCA GCCGCCGAGG
GTGGAGGCAG AGAACGCCTT GGCTAAACAC GTCGCAGAGA CTGTGGCTAA GGGCGGGAAG
GTCCTCATTC CCGCCTTTAG CACTGGGAGA GGGCAGGAGA TACTCTACAT ACTGAATAAG
ATGATGGAGG GAGGCCTCAT TCCCAGGGTC CCCATCTACG TAGACGGCAT GATTGTGGAG
ACGTTGAACG TCTACCTCAT GTACCCGCAC TACCTAAACC CAGAGGTGGC CGAAGAAATA
TACAGTGGGG TGAATCCATT TACCACGTCG GGCGCCGTGG TTATTGTAGA TAGGGCTAAG
CGGGTTGAGG ATAGGATAAA CCAGGTGGCT AAGATAGCCC AGAGCGAGGA GCCAGCCGTC
ATAATAGCGC CTCATGGCAT GTTAAACGGC GGACCTATCC TGGACTACTT CGCCCAGCTC
GCACCGGACG AGAGAAACAA GCTCATCTTT GTCTCATACC AAGCGGAGGG GACCTTGGGG
AGGAGGATAC TAAACGGGGA GAGGGAATTC ACTGTGCGTA GCTTGACTGC GGGCGAGATC
AAGGTACAGA TGAGGATGGA GGCGGCGTCG ATACCGGGGT TCTCGGGCCA CAGCGATAGG
AGAGAGCTTA TGAAGTACGT CGAACACATA GAGCCAAAGC CAAAGAAAAT TGTGCTTATA
CACGGCGAGC CGTCGAAGAT CATCAGCCTA GCCACCTCCA TCGAGCTCAA GTACAAGATC
ACGACTGTTG TGCCAAAGGT CGGCGAGAGG ATCAGGGCTC TATAA
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| Protein sequence | MSYLEVESKV KSILSGVEVA KVSFEGPNLC IYVRRPLDVA FDLVGEVAKA LKKRVVLRAD
ESSRLPEKRA RQVISEVLDG VEEVVFEKSG DVYVYLSKPA RGAELREAAR EIFVKTGWRA
VIESGVPRGG EKIPAHEVLA VRQIFHGAYE QRRELMERLA RFIHQEPVVK EGPITVTFLG
GAMEVGRSAV LVSTGESNVL LDCGLKPVQD DEDFPLLDML DLDRLDAVVL THAHMDHVGC
LPLLYKYGYR GPVYATDPTK YQAYILLMDY VELKEREGGL PSFSRADVEA VIYHTITLDY
EEVTDITPDI KLTFYDAGHE IGSAMAHLHI GNGRYNILYT GDFKYGKTRL LNRAVNKFKR
VEMLIMESTY GGRDDVQPPR VEAENALAKH VAETVAKGGK VLIPAFSTGR GQEILYILNK
MMEGGLIPRV PIYVDGMIVE TLNVYLMYPH YLNPEVAEEI YSGVNPFTTS GAVVIVDRAK
RVEDRINQVA KIAQSEEPAV IIAPHGMLNG GPILDYFAQL APDERNKLIF VSYQAEGTLG
RRILNGEREF TVRSLTAGEI KVQMRMEAAS IPGFSGHSDR RELMKYVEHI EPKPKKIVLI
HGEPSKIISL ATSIELKYKI TTVVPKVGER IRAL
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