| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0014 |
|---|
| Symbol | glyA |
|---|
| ID | 4909090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 8802 |
|---|
| End bp | 10094 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640123767 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_001054920 |
|---|
| Protein GI | 126458642 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCAA GGGAGATTAA AGAGGTTTTA GACGTCGTCT TGCGCCACAA TAGGTGGAGG
AGGTGGGAGA CTATAAACCT CATCGCGTCA GAGAACGTGA TGTCGCCTCT TGCAGAGATT
TTTTACATAA ATGACTTCGG CGGCAGATAC GCCGAGGGGA CAATTGGCAG TAGGTACTAC
CAAGGGACGA AGTATGTTGA CGTGGTTGAG GAGGCGTTGG TGAAGGAATT CGCCGAGGTC
CTTGGCGCAA AATTTGTGGA TGTGAGGCCA ATTTCTGGCA CAGTGGCCAA CCTGGCTACG
TACTTTGCCC TAGTGCCAGA AGGGGGATCT GTGGCGTCGC TTCCCATTAG ATGCGGCGGC
CACATTAGCC ATAGCAACGT GGGCGGGCTA AAGGCGTTGA GGATAAAGAC TGTGGAATTG
CCCTGGGACT TGGAGAACTT CAACGTCGAT GTAGACGCCG CGCGTAAAGT TCTTGAGGAT
AAGCGGCCAA ATCTCGTAAT ACTTGGCGGC TCTCTCTACT TATTTCCACA CCCCATCAAA
GAGGTTGCCG AAATAGCCAA AGGTATTGGG GCCTACGTGC TACACGACTC AGCCCACGTC
CTGGGGCTAA TAGTGGGGGG CGTCTTCCCA AATCCCCTCA GAGAGGGGGC CGACGTAATT
ACGTCGTCTA CTCATAAGAC TTTCCCAGGG CCTCAGGGAG GTCTCATAGC GACCAATCTA
GGTGATGATG CAAACGGCCA AATTCAGAAG GCTGTATTTC CAACATTTAC ATCGAATTAC
CATCTTCACC GCTACGTGGC CACATATATA ACTCTCGTCG AGATGAAGCT GTTTGGACAC
GAATATGCGA GCAGAGTTGT GGAAAACGCC AAAGCCTTGG CTGAGGCCTT GGCCGAGGAG
GGCGTCACGC CCGTGGCCGA GAGACTCGGC TTCACGAAGA CGCACCAGGT GGCAGTTGAC
GTGTCAAAGT ACGGCGGAGG CGACAAAGTT GCAGCGCTGT TGGAGGAGGC TAATATCATA
GTGAACAAAA ATGCCCTCCC CTGGGACAGA AGCGTGGTAA AGCCAAGCGG CATTAGGATT
GGGGTCCAGG AGATGACTAG GTTTGGCATG GGGAAAGACG AGATGAGGGA AATAGCCAAG
TTTATTGCGA GAGTTTTACG CGGCGAGGAC CCAGCCTCGG TTAGACGCGA CGTAGTAGAT
TTCAGGAGGG GGTTCGTGGA GGTGAAATAC GGCTTTAAGG CGAGCAGAGA AGTGATAGAA
GAGGTATTTG CATCGCTTAA TCTGCTGGCT TAA
|
|---|
| Protein sequence | MIPREIKEVL DVVLRHNRWR RWETINLIAS ENVMSPLAEI FYINDFGGRY AEGTIGSRYY
QGTKYVDVVE EALVKEFAEV LGAKFVDVRP ISGTVANLAT YFALVPEGGS VASLPIRCGG
HISHSNVGGL KALRIKTVEL PWDLENFNVD VDAARKVLED KRPNLVILGG SLYLFPHPIK
EVAEIAKGIG AYVLHDSAHV LGLIVGGVFP NPLREGADVI TSSTHKTFPG PQGGLIATNL
GDDANGQIQK AVFPTFTSNY HLHRYVATYI TLVEMKLFGH EYASRVVENA KALAEALAEE
GVTPVAERLG FTKTHQVAVD VSKYGGGDKV AALLEEANII VNKNALPWDR SVVKPSGIRI
GVQEMTRFGM GKDEMREIAK FIARVLRGED PASVRRDVVD FRRGFVEVKY GFKASREVIE
EVFASLNLLA
|
|---|
| |