| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0004 |
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| Symbol | |
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| ID | 4910185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1830 |
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| End bp | 3095 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640123757 |
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| Product | replication factor C large subunit |
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| Protein accession | YP_001054910 |
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| Protein GI | 126458632 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAATAC CTTGGGTGGA GAAATACCGC CCCAAGAGTT TTTCAGAGAT TGTAAACCAA
GAGGAAGCCA AGCAGATTTT GGCCTCGTGG ATTTGTACAC GGTTTAAAGC TCCGCAGGAG
TTTTGCGCCC GTTGGGCAAA GCGGAGAGAC AAAGAGATAA AAGAGGCTAG GGCTGTGCTC
CTATGGGGCC CCCCGGGCAT TGGAAAAACA ACGCTTGTGC ACGCCTTGGC TAAGGAGATC
GGATATGAGC TCGTGGAGCT TAACGCAAGT GACGTAAGAA CAGGCGAGCG GATTAGGCAG
GTGGTGGGCC GCGGACTTAG AGAGGCATCT CTCTTCGGAT ACGCGGGTAA AATCGTCTTA
TTTGACGAAG TGGATGGACT ACATGTAAAA GAAGACTTAG GGGGACTTGA GGCCATACTT
AACCTAATAG AGACGGCCAA AGTGCCAATA GTGCTAACTG CCAACAACCC ATTTGACCCC
AAGCTACGGC CGCTCCGCGA CATCTCCCTA GTGGTTGGGC TAAAGAGGCT CTCCGAGGAC
GAAGTAGTTG AAGTGCTCAA GAGAATTTGT GCCAGCGAAG GTGCCAAGTG TGAAGAAGAG
GCTCTTAGAA GCTTGGCCAA ATCCTCCTAC GGCGATTTGC GGGCCGCAAT AAACGACCTA
CAGCTGTACT TGGCGGGGCG CAAAGTTTTA ACAGTTGACG ACATAAAGAG GGCGGGGGAG
AGAAACCCCC AGCTTTCTAT GTTTGAAATC TTAGATAGAG TATATAAGGC GCGTTGGTTT
GACGAAGCAC GCGCCGTCTC GTTTAACCCA TCTTTTGACT GGGAACAATA CTTCGTGTGG
GCTCTCGAGA CAATTCCCAT AGTTTATAAA GACCTAGAGG TCATGTCTGA GGCTTTTGAC
AGATTAAGCA AAGCAGACAT GTTTATAGGA ATAGTTAAAC GAACACAAGA GTGGGAACTC
CTGTCATATG CAATGGAGCT TGCACTAGGC GGAGTTTCTC AAGTCAAAAA TAAGCCTCGC
CTACCGCCGT TTATTAGATA CGGGTTTCCC CAGCGACTAC TTCTCTTGGC CAAGAGTAAG
GAGGCCCGCA GACGCAGAGA AATGGTTGTA GAATATCTCG CTAGAAATTT ACATGTGTCA
AAGGGACTGG TAAATGCTGA AATATTTTAT GTACTATCTG CTCTGGCTAA GAAGGACGAT
CATGTAGTTG AGAGACTTGC AAGAGCGTTG GGGATAAGCC CCATTGACAT AAAAAATCTA
CTATAG
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| Protein sequence | MPIPWVEKYR PKSFSEIVNQ EEAKQILASW ICTRFKAPQE FCARWAKRRD KEIKEARAVL
LWGPPGIGKT TLVHALAKEI GYELVELNAS DVRTGERIRQ VVGRGLREAS LFGYAGKIVL
FDEVDGLHVK EDLGGLEAIL NLIETAKVPI VLTANNPFDP KLRPLRDISL VVGLKRLSED
EVVEVLKRIC ASEGAKCEEE ALRSLAKSSY GDLRAAINDL QLYLAGRKVL TVDDIKRAGE
RNPQLSMFEI LDRVYKARWF DEARAVSFNP SFDWEQYFVW ALETIPIVYK DLEVMSEAFD
RLSKADMFIG IVKRTQEWEL LSYAMELALG GVSQVKNKPR LPPFIRYGFP QRLLLLAKSK
EARRRREMVV EYLARNLHVS KGLVNAEIFY VLSALAKKDD HVVERLARAL GISPIDIKNL
L
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