| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_69588 |
|---|
| Symbol | CUP5 |
|---|
| ID | 4851752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 2745056 |
|---|
| End bp | 2746483 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | |
|---|
| GC content | 42% |
|---|
| IMG OID | 640393460 |
|---|
| Product | vacuolar ATPase V0 domain subunit c |
|---|
| Protein accession | XP_001387092 |
|---|
| Protein GI | 126275492 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0636] F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K |
|---|
| TIGRFAM ID | [TIGR01100] vacuolar ATP synthase 16 kDa proteolipid subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.406866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CATTTCCCAA GTCAATATGT CTGATTTATG GTATGTGTAT AACGTGTCAG CCGATTGGCG
AAGTCTCGGC CGCGGACGTA TCTCTGGTTA TCGAATTCAG TGATCTCCTT TCCTCCAATA
ATAGCCATTT CTGAGCATTG CCCAAACAAC ACATGTGTTC AGGGATTCGA CATCCAGAGG
CGGAAATCGT GATATCGCCA ATCATGGTGA GCTACTCACC TAGTTGAAAC ACTGCTGAAG
TGTCAATTGG CCCGGATGGA AAGTTTTCCG GCTTTCTGCA TCACCATCTC ATATCGGTTA
ATCAGATAGT GATACATGAC TGAGGTGCCT CTAATTTCAC CATCGGAAAC TAAGTATCCA
GTGACTCTAT GGAATGCTAG AGCCAATAAA CCTACATCGT TGTGTATGGT ATTCAGTTGA
TTCCTATAGA TTCTCAGTGC AGTTAGGCGC TTTAAGTGTC ATTATCCCGT CGTTGTATCA
TTAAGTGCTA AGGATCTTTA AGTTGTACCC TTCTTTATAT CAATTGCAAT CTACTCATGC
TGTCCACTCC TAGTACTCTC TGCTGTCAGT ATCCATCATT AATAATTGCA TCCGTATCCT
GATCTAATGG TTAATTGATT CTTTTTCGAT AATGTTTTCG CCACTGTTCG TCTGCTTAAT
ACTAACCCTT CTAGCCCAGT TTACGCTCCC TTCTTTGGAG CCATCGGTTG TGCCGCCTCC
ATCGTGTTCA CCTGTTTCGG TGCCTCCTAC GGTACGGCTA AGTCTGGTGT CGGTATCTGT
GCCACTTGTG TCACTAGACC AGACTTGTTG GTCAAGAACG TTGTTCCTGT CGTTATGGCC
GGTATCATTG CCATTTACGG ATTGGTCGTA TCTGTGTTGG TGTCAGATGG GTTGAAGCAA
GAATTGCCTT TGTACTCTGG TTTCATCCAA TTGGGTGCTG GTTTATCTGT TGGTTTGTCC
GGTTTGGCTG CTGGTTTCGC CATTGGTATC GTTGGTGACG CTGGTGTCAG AGGTAACGCC
CAACAACCAA GATTGTTCGT CGGTATGATT TTGATTTTGA TTTTCGCCGA AGTCTTGGGT
TTGTACGGTT TGATTGTCGC CTTGTTGTTG AACTCTAAGG CCGCTCAAGA TGTGAAGTGT
TAAAGAATGA CGATAGGCAA CATCACAATG AATATATTTG TTGTTGAACT GTCTATACGG
ATTCCCTCTC ATTCACATCA TATTTAATCG AACCAATGAA AAACGAAATT TCAATATTCA
TCTATTATTG TTTTATCATA GTTAGACTCA TTTTTTTTAA TTCACTGAAA TCAGACATCT
AAAATGCATC CATACGGATG GTTTCTTCAT TTATTTTTAT AGAGACCTGG GAGTCGCTCC
TTGGTTTTGA TTTGTCAATT CTCTGTTAGT TGAATTTCAA TATCATAT
|
|---|
| Protein sequence | MSDLCPVYAP FFGAIGCAAS IVFTCFGASY GTAKSGVGIC ATCVTRPDLL VKNVVPVVMA
GIIAIYGLVV SVLVSDGLKQ ELPLYSGFIQ LGAGLSVGLS GLAAGFAIGI VGDAGVRGNA
QQPRLFVGMI LILIFAEVLG LYGLIVALLL NSKAAQDVKC
|
|---|
| |