| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_53985 |
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| Symbol | VCX1.2 |
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| ID | 4852018 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 3424746 |
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| End bp | 3427970 |
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| Gene Length | 3225 bp |
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| Protein Length | 967 aa |
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| Translation table | |
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| GC content | 43% |
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| IMG OID | 640393726 |
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| Product | Ca2+/H+ antiporter |
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| Protein accession | XP_001386986 |
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| Protein GI | 126276324 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0387] Ca2+/H+ antiporter |
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| TIGRFAM ID | [TIGR00378] calcium/proton exchanger (cax) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0314274 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATC CAGTTGACCC CAACTTGACC CGATCGCCCC GGCTCAAGCC TGATGCCTCC
GTAGAAACAG AGTTTCTGCG CAACTCATCC ATCATCAACA TTCTGCTGCA ACCGACTTCT
GTTCGTAACA GACTGACTAC CAAGTTGAAA CGCAAGTCTA GACCGCACTT GCGGAGGGCC
GAATCGCTTT CCGGTCATCA GAAACTCGTA TTTTCAGTCG ATGACGATAT CAACGATGCC
ATAGACGAAG ACACAAACGA AGAAGACATC GTGAGAGACC CGATCAAAAA AGAGAGGGAC
TATTTAGTGG GTTATAACGA TGCGTTAAAG TCGTTATACC AGCGAAAAAA GCACGCTTCA
GTCGCCCCTG CTGCTGGTCC TGGTTTGGGA ACTGTTCCCG TCATTCATGG TCCAGGATTA
TTGCCCGAAG TCGCCCGATT GAGAGAACGA GACGCTCTTC TGTCCTCAGA AGACTTGCCC
AATCGTAGGA AAGGCACCAA ATCGCCTGAA CTTATTGCCG AATTAGAGTC ACATATCGCC
AAAGACTTAC TTGATGCTAG GGACAATATC CGGTTACTCG ATGAAGAGAG AAGGAAAAGC
TCCGAGAACA TCCTCTTGGG TGATAACAGC GAAGAAGATG CATTGGATGA AGTAGACGAA
GTAGATGTCG ATGAAGGAGA TGATGACGAT GGTGATTCTG TTAAGTCATC TTCACTGTCG
CAGACAGTAG AATCATTGAA CTTGCGTGAA AGACAAGATG CCATTAATTC AACCCATCCC
TTTGGTATCA AGATCTGGAA GCCTTCATTG TACAAGAAAA AGAGATCTGT AGCCGCCAGG
GCTGAGGAGG ACATCCACGA CTTTGACCCC AGAAAGCCTA CGGCCCGAAT CTTTTGGGGT
GTTACTATCA CCAACTACAT ATGGTCGTTG ACTTTTGGCC TTCTTTTGTT CCTTGTCTGT
TTGCTAGGAG CGTTCATTGC ATTTGTGGTT TCTGGCTTTG GAATCCATCG TCCTCTGAGA
CAGTATGTCA CCCTCTTGTT GAAATTGGGA AAGTATTGGT TGTATCCTTT TGGGAAGTTT
GTACTCTTGA ACAAGGACGA GAACTACTTG GATGAAGACG AATTGGACGG AAGATCCATA
TCTGAATTCC ATAGATGGAG ATTGCAAGAA GAAGGAAGAT TGTTTTTTGC TCCTCCAAGA
AGATACACCA CAGGTGCAGA ATCCAGACCT TTACTTAAGG ATCACAAGGG TCGTCCACTT
CGCGATGCCT ACTCTTCGTT AGATGAACAT GATTCCAATG GTGATGCAGA TGCTGCTCCA
GAAGATCCTA CCGACAGTCC AGACATTAAG GTTCGTTTCT TTGGTAGAGG TAGTTGGTCT
TCTGGAAGAT TGATCTTCTA CATCTTTTTC TATGGAATTC TACAGCCAGT GTTGTATATT
GTAGGTTTGC TATGTTGGTT AATTGTTTTC ACCATCCCCA TGGCCAATAT CACCTTCATT
GTCTGCGACC ATTTGAGAAG ACATCCTCTT GCTCTCGATT TCGAGTTGGA GAAGGAGTAC
TACAAGAAGC TTGAGAAAAG AAAGAAGAAG AAGAACCAGA TGATTGTAGT GTCTACCTAC
AGATGTTGTG GATTCCATTA TTACAAATAT ACCATAGACG GTACTAATAT CTTTTTCATC
AATTTGTTGA CGGTGGTTCT TTTCGTCATT TTAGACTATT TCTTCTTGAA GGAGAAATTG
CACTGGGACT ATTGGTTTAC AGACTCGTCG TTTTTATTCT GTGCGTGTCT CTTTTCTATT
ATCCCATTGG CCTATTTCAT TGGACAAGCG GTAGCTTCGA TCTCGGCTCA ATCTTCTATG
GGCGTAGGTG CTGTGATCAA TGCCTTCTTT TCAACAATTG TTGAGATTTT CTTATATTGT
GTTGCTTTAA ATCAGTCAAA AGCAAAATTG GTGGAAGGTT CAATGATCGG CTCGATTCTT
GGTGGTGTTC TTTTGCTTCC TGGTTTATCC ATGTGTGGAG GTGCTCTTAA GAGAAAGACC
CAACGATACA ACCCCAGATC TGCTGGTGTT TCTTCAACTA TGTTGTTGTT CGCTATGGTT
ATAATGTTTG CACCTTCCTT ATTCTACCAA ATTTATGGTG CTTATGAGAT CAAATGTATG
AGGTGTGATA TAGTCTCAGG TAATGAGCAA GACGATTGCA CCAAGTGTCG TTTTATCCAG
CCTACATTCA CTCTCGATGT GTTGTTCTAC AACATTATTC AGCCTTTTTC ATTAATTGTA
GCTATAGCTT TGTTCTTGGC TTATGTTTGT GGTTTGTATT TCACATTGAG AACCCATGCT
TCTTTGATTT GGGCCACAAC CATTCATGAA GCTGGGCCCA TGAAGAAAGA TGATGGCTAT
TTCAGATCAC CTAGTATTTC AAGTGTGGCT ACTCCTCAAC AACTTCCCAA ATTGGGCAAT
ATCAATACCA AACTTTCTTC TCTTCCACCT TCTGCCACTG CTATTTCCAG TGGTTCAGAT
GTTCGTGGCA GACCTGGCCA GTCTTCGAAA CTCACTTTGG ATTTGAATTC GCCTAGTCTC
GAAGTTTCGA AGACTAGACC ACCTAGAGTG GAGTCACTGG TTCCAGTAAC ACCTTCAAGA
CAGCTGATAT CTAAGGAGAT TGCCGACGAA GAAAATGGAG GAGGGCACGA TGCTCCAAAT
TGGTCTCGTA ATAAATCCAC TATAATATTG CTAGGTGCTA CGTTACTCTA TGCTATAATT
GCTGAAATCT TGGTTGACAA TGTGGACTCG GTTTTGTCGA GTTATCCAAT TGATCCTAAA
TTCTTGGGTT TGACAGTGTT TGCCTTAGTG CCAAATACTA CTGAATTCCT CAACGCTATT
TCGTTTGCTA TTAGTGGAAA CGTTGCGTTG TCAATGGAAA TCGGTAGTGC CTATGCCTTA
CAGGTTGTCT TGATCCAGAT TCCAAGTTTG GTTCTTTATT CAATGTATAT GGCCAGCACT
GATGTGAGCC AGATCTTCAC GTTGGTTTTC CCTAGATGGG ATATAATCGC TACTTTGATT
TCAATTTACT TGTTCACGTA CATCTACGCT GAAGGCAAGT CTAACTACTT CAAGGGTGTT
ATATTGATAT TAATCTACGC TGTGGTCATG ATCGGCTTCT GGTTTAATGA TAAAATCATT
GCATTGGACG ACGGTTACTC TGGAGGACCC GAACTTTTTC GCTGA
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| Protein sequence | MTDPVDPNLT RSPRLKPDAS VETEFLRNSS IINILLQPTS VRNRLTTKLK RKSRPHLRRA
ESLSGHQKLV FSVDDDINDA IDEDTNEEDI VRDPIKKERD YLVGYNDALK SLYQRKKHAS
VAPAAGPGTK SPELIAELES HIAKDLLDAR DNIRLLDEER RKSSENILLV DEVDVDEGDD
DDGDSVKSSS LSQTVESLNL RERQDAINST HPFGIKIWKP SLYKKKRSVA ARAEEDIHDF
DPRKPTARIF WGVTITNYIW SLTFGLLLFL VCLLGAFIAF VVSGFGIHRP LRQYVTLLLK
LGKYWLYPFG KFVLLNKDEN YLDEDELDGR SISEFHRWRL QEEGRLFFAP PRRYTTGAES
RPLLKDHKGR PLRDAYSSLD EHDSNGDADA APEDPTDSPD IKVRFFGRGS WSSGRLIFYI
FFYGILQPVL YIVGLLCWLI VFTIPMANIT FIVCDHLRRH PLALDFELEK EYYKKLEKRK
KKKNQMIVVS TYRCCGFHYY KYTIDGTNIF FINLLTVVLF VILDYFFLKE KLHWDYWFTD
SSFLFCACLF SIIPLAYFIG QAVASISAQS SMGVGAVINA FFSTIVEIFL YCVALNQSKA
KLVEGSMIGS ILGGVLLLPG LSMCGGALKR KTQRYNPRSA GVSSTMLLFA MVIMFAPSLF
YQIYGAYEIK CMRCDIQDDC TKCRFIQPTF TLDVLFYNII QPFSLIVAIA LFLAYVCGLY
FTLRTHASLI WATTIHEAGP MKKDDGYFRS PSISSVATPQ QLPKLGNINT KLSSLPPSAT
AISKNGGGHD APNWSRNKST IILLGATLLY AIIAEILVDN VDSVLSSYPI DPKFLGLTVF
ALVPNTTEFL NAISFAISGN VALSMEIGSA YALQVVLIQI PSLVLYSMYM ASTDVSQIFT
LVFPRWDIIA TLISIYLFTY IYAEGKSNYF KGVILILIYA VVMIGFWFND KIIALDDGYS
GGPELFR
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