| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_34146 |
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| Symbol | RPB140 |
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| ID | 4851014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 714755 |
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| End bp | 718453 |
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| Gene Length | 3699 bp |
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| Protein Length | 1232 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640392722 |
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| Product | DNA-dependent RNA polymerase II |
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| Protein accession | XP_001387366 |
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| Protein GI | 126273976 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.19062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCCC AAGACGATCC CTATTTGTAC GACGACGGCG ATGCCCAGAG CATTACGCCC
GAAGACTGCT GGACGGTGAT CCTGTCTTTT TTTCAGGAAA AAGGTTTGGT CTCCCAGCAG
TTGGACTCGT TTGACGAGTT CATCGAGACA ACCATCCAGG AGTTGGTGTG GGAGGATTCG
CATTTGATTC TCGACCAGCC AGCTCAACAT ACTTCCGAAG ATGACCACGA GAACAGACGT
TACGAAATCA CATTTGGCAA GATCTACATC TCTAAGCCTA TGCAGACAGA AGGCGATGGT
ACCACTCATC CCATGTTCCC TCAAGAAGCC CGTTTGAGAA ACTTAACTTA CTCCTCACCT
TTGTATGTAG ACATGACCAA AAAGGTGTTC AAGTCCGATG ACAACAGACG GAAGGAAAAC
GAGTTGGAAT GGGTAGAAGA AAAGGTAGAA GATGAAGAAC CTCAACAAAA GGTCTTTTTG
GGTAAAGTAC CCATCATGTT GCGGTCCAAG TTCTGTATGT TGCGTGATTT AGGTGAACAC
GAGTTCTTCG AGTTGAAAGA GTGCCCTTAC GATATGGGAG GCTACTTTGT CATCAACGGT
TCGGAAAAGG TGTTGATTGC CCAAGAGAGA AGTGCTGCAA ATATTGTTCA AGTATTCAAG
AAGGCTGCTC CTTCTCCTAT TTCTCATGTT GCAGAAATAA GACTGGCTCT TGAAAAGGGT
TCGCGTTTGA TTTCGTCGAT GCAAATCAAA TTGTACGGTA GAGACGAAAA GGGAACGTCT
GGTAGAACGA TCAAGGCTAC ATTGCCTTAC ATCAAGGAAG ACATTCCTAT CGTAATCGTA
TTCAGAGCGT TGGGTGTAGT CCCCGACGGA GACATCTTAG AACACATCTG TTACGATGCT
AATGATTGGC AGATGTTGGA GATGTTGAAA CCCTGTGTGG AAGAAGGGTT TGTAATTCAA
GAAAGAGAAG TCGCTCTTGA TTTCATTGGT AGAAGAGGTG TTTTAGGTAT CAGAAGAGAA
AAACGTATCC AGTATGCTAA GGATATCTTG CAGAAAGAGT TGTTGCCTAA TATCACACAG
GAAGAGGGCT TTGAGTCTAG AAAGGCATTC TTCTTAGGTT ACATGGTCAA CAGATTGTTG
TTGTGTGCAT TGGAAAGAAA GGAGCCAGAC GACAGAGACC ACTTTGGTAA AAAGAGATTG
GATTTAGCTG GACCCTTATT GGCCAACTTG TTCCGTATTC TCTTCAGAAA GTTAACCAAA
GATATATACA ACTACATGCA GAGATGCGTA GAAAACGACA AAGAATTCAA TTTGACGTTG
GCCGTCAAGT CCCAAACCAT AACCGATGGT TTACGTTACT CTTTGGCTAC AGGTAACTGG
GGTGAACAGA AGAAGGCCAT GTCGTCCCGT GCTGGTGTAT CTCAAGTTTT GAATCGTTAC
ACATACTCAT CTACCTTGTC ACATTTGAGA AGAACAAATA CTCCTATTGG ACGTGATGGT
AAGATCGCCA AGCCCAGACA GTTGCATAAC ACTCACTGGG GATTAGTATG TCCAGCAGAA
ACGCCTGAAG GACAGGCGTG TGGGTTGGTT AAGAACTTGT CTTTAATGAC ATGTATTTCA
GTTGGTACAC CTTCTGAGCC TATCTTATAC TTTTTGGAAG AATGGGGTAT GGAGCCTTTG
GAGGATTATG TTCCTTCTAA TTCTCCTGAC TCGACCAGAG TGTTCGTAAA CGGTGTTTGG
GTTGGTACTC ACAGAGATCC AGCCAACTTG GTTGATACCA TGCGTAGTTT AAGAAGACGA
GGTGATATAT CTCCTGAAGT TTCTATTATC AGGGACATCA GAGAAAAAGA GTTTAAGATC
TTCACCGATG CTGGACGTGT TTACCGTCCG TTGTTCATTG TAGACGACGA GGCCGAGTCC
GAAACCAAAG GTGACTTGAA GTTGCAGAAG GAGCATGTCC ACAACTTGTT GTCGTCTGAA
TACGACGAGT ACGAAGACCC AGACAACGAA GGAGCCAGTT ACACCTGGCT GTCATTGATT
AATGATGGTG TTGTAGAGTA TGTAGATGCT GAAGAAGAAG AAACCATTAT GATAGCCATG
ACACCAGAGG ACTTGGAAGC TTCCAAGAAT GCTATTACTG AAACTCCAGA TAAGTCTGTG
CTCGAAGAGC AAGAGTTAGA CCCAGCCAAG AGAATCAAGC CTACTTTCTC AGCTGCCACA
CATACATTCA CCCATTGTGA GATCCATCCA TCTATGATTT TGGGAGTGGC AGCTTCGATT
ATCCCCTTTC CAGATCATAA CCAATCGCCT CGTAATACCT ATCAATCTGC TATGGGTAAG
CAAGCCATGG GTGTCTTTTT GACTAACTAC TCTGTGAGAA TGGATACTAT GGCCAACATC
TTGTACTATC CACAGAAACC TCTAGCTACC ACTAGAGCCA TGGAGCACTT GAAGTTTAGA
GAGTTGCCTG CTGGGCAAAA CGCCATTGTT GCCATTGCTT GTTACTCCGG TTACAATCAA
GAAGATTCAG TGATTATGAA CCAATCATCC ATCGACAGAG GGTTATTCAG ATCATTGTTC
TTTAGAACGT ATATGGATTT GGAAAAGAGG CAGGGTATGA AGGCATTGGA AACATTTGAA
AAGCCTTCTC GTTCGGATAC ATTAAGGCTT AAGCACGGAA CCTACGAGAA GTTGGATGAC
GATGGGTTGA TTGCTCCTGG TGTCAGAGTC AGTGGTGAGG ACATCATAAT TGGTAAGACT
ACACCTATTC CTCCAGACAC TGAGGAGTTG GGACAAAGAA CACAATACCA TACCAAGAGA
GATGCTTCCA CGCCTTTGAG AAGTACCGAG TCTGGTATCG TCGATCAGGT GTTGTTAACC
ACGAATGGTG ATGGTGCAAA GTTTGTCAAG GTGAGAATGA GAACAACCAA GATTCCTCAG
ATCGGTGACA AGTTTGCTTC CAGACACGGA CAGAAGGGTA CTATTGGTGT TACCTATAGA
CACGAAGATA TGCCGTTCAC AGCCCAGGGG ATTGTTCCCG ATCTTATTAT CAACCCCCAT
GCCATTCCCT CTCGTATGAC GGTTGCGCAT TTGATTGAAT GTTTGCTTTC GAAGGTGTCG
TCATTGTCTG GGCTCGAAGG TGATGCTTCT CCCTTTACCG ATGTCACTGC TGAGGCTGTA
TCCAAGTTGT TGAGAGAACA CGGCTACCAA TCGAGAGGTT TCGAAGTCAT GTACAACGGT
CACACTGGTA AGAAGTTGAT GGCACAAGTA TTCTTTGGAC CTACGTACTA CCAGAGATTG
AGACACATGG TCGATGACAA GATCCACGCC AGAGCCAGAG GACCAGTTCA AGTCCTTACC
AGACAACCAG TAGAAGGTAG ATCGAGAGAT GGTGGTTTAC GTTTCGGTGA AATGGAAAGA
GATTGTATGA TTGCCCATGG AGCTGCTGGA TTCTTGAAGG AAAGATTGAT GGAGGCATCT
GATGCCTTCA GAGTCCATGT CTGTGGTATG TGTGGTTTGA TGACGGTTAT TGCCAATTTG
AAGAAGAACC AATTCGAGTG TCGTTCGTGC AAGAACAAGA CCAACATCTA CCAGATTCAT
ATTCCATATG CTGCCAAGTT GTTGTTCCAG GAGTTGATGG CAATGAATAT TTCTCCAAGA
ATGTATACCG AAAGATCACA GAACAGCATT AGAGTTTGA
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| Protein sequence | MDSQDDPYLY DDGDAQSITP EDCWTVILSF FQEKGLVSQQ LDSFDEFIET TIQELVWEDS
HLILDQPAQH TSEDDHENRR YEITFGKIYI SKPMQTEGDG TTHPMFPQEA RLRNLTYSSP
LYVDMTKKVF KSDDNRRKEN ELEWVEEKVE DEEPQQKVFL GKVPIMLRSK FCMLRDLGEH
EFFELKECPY DMGGYFVING SEKVLIAQER SAANIVQVFK KAAPSPISHV AEIRLALEKG
SRLISSMQIK LYGRDEKGTS GRTIKATLPY IKEDIPIVIV FRALGVVPDG DILEHICYDA
NDWQMLEMLK PCVEEGFVIQ EREVALDFIG RRGVLGIRRE KRIQYAKDIL QKELLPNITQ
EEGFESRKAF FLGYMVNRLL LCALERKEPD DRDHFGKKRL DLAGPLLANL FRILFRKLTK
DIYNYMQRCV ENDKEFNLTL AVKSQTITDG LRYSLATGNW GEQKKAMSSR AGVSQVLNRY
TYSSTLSHLR RTNTPIGRDG KIAKPRQLHN THWGLVCPAE TPEGQACGLV KNLSLMTCIS
VGTPSEPILY FLEEWGMEPL EDYVPSNSPD STRVFVNGVW VGTHRDPANL VDTMRSLRRR
GDISPEVSII RDIREKEFKI FTDAGRVYRP LFIVDDEAES ETKGDLKLQK EHVHNLLSSE
YDEYEDPDNE GASYTWLSLI NDGVVEYVDA EEEETIMIAM TPEDLEASKN AITETPDKSV
LEEQELDPAK RIKPTFSAAT HTFTHCEIHP SMILGVAASI IPFPDHNQSP RNTYQSAMGK
QAMGVFLTNY SVRMDTMANI LYYPQKPLAT TRAMEHLKFR ELPAGQNAIV AIACYSGYNQ
EDSVIMNQSS IDRGLFRSLF FRTYMDLEKR QGMKALETFE KPSRSDTLRL KHGTYEKLDD
DGLIAPGVRV SGEDIIIGKT TPIPPDTEEL GQRTQYHTKR DASTPLRSTE SGIVDQVLLT
TNGDGAKFVK VRMRTTKIPQ IGDKFASRHG QKGTIGVTYR HEDMPFTAQG IVPDLIINPH
AIPSRMTVAH LIECLLSKVS SLSGLEGDAS PFTDVTAEAV SKLLREHGYQ SRGFEVMYNG
HTGKKLMAQV FFGPTYYQRL RHMVDDKIHA RARGPVQVLT RQPVEGRSRD GGLRFGEMER
DCMIAHGAAG FLKERLMEAS DAFRVHVCGM CGLMTVIANL KKNQFECRSC KNKTNIYQIH
IPYAAKLLFQ ELMAMNISPR MYTERSQNSI RV
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