| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_4084 |
|---|
| Symbol | |
|---|
| ID | 4843472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 4790514 |
|---|
| End bp | 4792676 |
|---|
| Gene Length | 2163 bp |
|---|
| Protein Length | 720 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640121350 |
|---|
| Product | ornithine decarboxylase |
|---|
| Protein accession | YP_001052419 |
|---|
| Protein GI | 126176270 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT TAAAAGTAGC CGCTAGCTTA TCTGTTAGAT CTTGTTTCGA TATCGACAGA
GAAGTCGTCA ATGTATTAAC CACAGATTTT TGCGATGTGG GCGCGGCTGT AGTCTCTGTT
GATGATGTTA GAAATGGTAT TGTTGAAAAG ATTAAAAACA CCGGATTGAA ACTACCGATT
TTCGTTTCAG TTTGCTGCGA AGAAACTTTC CCAGACGATG TTTGCTCATC TATTACTGGG
GTATTTGAAC TCTGCGGCGA TAACACTGAC TTCTACGGAA AACAGGTTGA AACTGCGGTC
GATAAATATG AGCAAGCGCT ATTACCTCCT TTCTTCGGCA CACTGAAAAA GTACGTTGAG
ATGGGTAATT CCACCTTTGC TTGTCCAGGT CACCAAGGCG GACAATTCTT CCGTAAGCAT
CCTGTGGGTC GTCAGTTCTT CGACTTTTTT GGCGAAACGA TTTTCCGCGC CGACATGTGT
AATGCCGACG TCAAATTGGG TGATTTATTG ATCCATGAAG GCGCACCACT GGCAGCGCAG
AAATATGCTG CCAAAGTCTT TAATGCCGAT AAAACCTACT TTGTACTTAA CGGGACTTCA
TCTTCAAATA AAGTGGCCAC CAATGCGCTG CTTGCTAAAG GTGACCTGGT ATTATTCGAC
CGCAATAACC ACAAATCAAA CCACCATGGC GCGTTAATCC AAGCTGGTGC AACCCCCGTT
TATTTAGAAA CCGCACGTAA TCCCTTCGGA TTTATTGGTG GTATCGACGC TCATTGCTTC
CAAGAGTCCT ATTTAAGAGA TCAAATTCGC GAAGTCGCCC CAGAAAGAGC CGATGAAAAA
CGCCCCTTCC GTTTAGCGAT AATCCAACTC GGCACCTATG ACGGCACCAT CTACAATGCT
CGCCAAGTAA TTGATAAAAT TGGTCATCTG TGTGATTACG TCTTATTTGA CTCAGCTTGG
GTCGGTTACG AACAGTTCAT CCCTATGATG AATGACTGCT CGCCACTCTT GCTCGAACTG
ACCGCTGAAG ATCCTGGCAT TATCGTGACT CAGTCGGTGC ATAAACAGCA GGCGGGCTTC
TCGCAAACAT CGCAAATCCA TAAAAAAGAT AAACATATCA AAGGCCAAGA TAGATATTGC
AACCATAAAC GCTTCAACAA CGCCTTTATG ATGCATGCTT CTACCAGCCC CTTCTATCCT
CTATTTGCGG CGCTAGATGT GAACGCGAAA ATGCATGAAG GCGCAAGCGG TCGTTACCTG
TGGCGCGAAG CGGTAAAAGC CGGCATTGAA GCACGTAAGC TACTGCTGAA AAAGTGTAAA
TATATCAAGC CATTCGTGCC AACCATGATA GATGGCCGCC TATGGCAAGA CTATGAAACA
GAGCAAATGG CCGATGACTT ACGCTTCTTC GAATTCGAAC CCGGTCAGAA ATGGCACTCA
TTCGAAGGTT ATGACAAAGG CCAATACTTT GTTGACCCTT GTAAGTTCCT ATTAACAACA
CCAGGCATAG ATGTAGAAAC CGGTAAATAT ACCGACTTTG GTATTCCAGC GACTATTCTG
GCTAACTTCT TACGGGAAAA TAATATTATT CCTGAGAAGT GCGACTTAAA TTCGATTTTA
TTCCTGATGA CGCCTGCGGA AGATATGGCC AAGATGCAAC ATCTGGTCTC ACAAATATCT
CGATTCGAAA AATTAGTCGA TGAAGATGCA CCATTATCTG AAGTTTTACC TAACGTCTAT
AACGCGAATA AAGCACGTTA TCAAGACTAT ACCATCCGCC AACTTTGCCA AGAAATGCAC
AATCTTTATG TCAGCCATGA CGTAAAACAA CTGCAGAAAG AAATGTTCCG TAAAGCGCAT
TTCCCAACCA AAGTCATGGA TCCACAGGAA GCAAACCTAG AATTTATTCG TGGCAAAGTC
GAATTAGTCC CGCTATCACA AATTGAGGGA AGAATTGCTG CAGAAGGCGC ACTTCCTTAC
CCACCAGGTG TGCTATGTAT GGTACCAGGT GAAATATGGG GTGGCTCTGT TCAACGTTAT
TTCCAAGCTC TCGAAGAAGG TATCAACTTA TTACCTGGAT TCTCGCCAGA ACTACAAGGT
GTTTATCTCG AAAACACCCC TGACGGCAAA ATTCAAGCAA TGGGCTATGT ACTTAATAAA
TAA
|
|---|
| Protein sequence | MKSLKVAASL SVRSCFDIDR EVVNVLTTDF CDVGAAVVSV DDVRNGIVEK IKNTGLKLPI
FVSVCCEETF PDDVCSSITG VFELCGDNTD FYGKQVETAV DKYEQALLPP FFGTLKKYVE
MGNSTFACPG HQGGQFFRKH PVGRQFFDFF GETIFRADMC NADVKLGDLL IHEGAPLAAQ
KYAAKVFNAD KTYFVLNGTS SSNKVATNAL LAKGDLVLFD RNNHKSNHHG ALIQAGATPV
YLETARNPFG FIGGIDAHCF QESYLRDQIR EVAPERADEK RPFRLAIIQL GTYDGTIYNA
RQVIDKIGHL CDYVLFDSAW VGYEQFIPMM NDCSPLLLEL TAEDPGIIVT QSVHKQQAGF
SQTSQIHKKD KHIKGQDRYC NHKRFNNAFM MHASTSPFYP LFAALDVNAK MHEGASGRYL
WREAVKAGIE ARKLLLKKCK YIKPFVPTMI DGRLWQDYET EQMADDLRFF EFEPGQKWHS
FEGYDKGQYF VDPCKFLLTT PGIDVETGKY TDFGIPATIL ANFLRENNII PEKCDLNSIL
FLMTPAEDMA KMQHLVSQIS RFEKLVDEDA PLSEVLPNVY NANKARYQDY TIRQLCQEMH
NLYVSHDVKQ LQKEMFRKAH FPTKVMDPQE ANLEFIRGKV ELVPLSQIEG RIAAEGALPY
PPGVLCMVPG EIWGGSVQRY FQALEEGINL LPGFSPELQG VYLENTPDGK IQAMGYVLNK
|
|---|
| |