Gene Sbal_3840 details

Gene Information

• Locus tag: Sbal_3840
• ID: 4843969
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS155
• Kingdom: Bacteria
• Replicon accession: NC_009052
• Strand: -
• Start bp: 4511680
• End bp: 4513623
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640121104
• Product: regulatory protein CsrD
• Protein accession: YP_001052180
• Protein GI: 126176031
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTCA CCCGAATGTT AACTACAAAA TTAACCAGCT TTTGGTTAAT GTCATTAGCA 
GCTATTGCCT TCGTATTTTT GCTGAGCGCT ATGATGAGTT TCGTGCAGCT GACCTATAAA 
TTTCAGCAGC AAAAAGTCGC CGAACTCGAA ACTATGTTAG TGGACCAATA TCAACACCAA 
CCCGATTGGG ATTTGGAGGC TTGGCTGCCG CCCATGCTGC TCGCCTACAA TGCTGTTGAT 
TTTCGGCTGA CCTTGAAAGA TGAAGTGATC TTTGCCTATG AAGGCAATCT CACTTCGCAA 
AATGCCATGG TGTATGACCA TGTGTTAGAT CCAAAATCTG GTCTGCGCAT GCAGCTGACT 
TTGACTCAAC CCTTCGAGCA TTACACTTTT AGTTGGTATG AAATCCTGAT CCTGTTGGTC 
GGTGTGTTAG CTGTGGCTGC CTTAGTGCGT TTTGGCTATT TATGGTTTTC CCAGCAATTG 
GATGGCATTG AAGAATTAGC CTTACGCAGT CGATTGATTC TGCAAGGTAA GCACGAGCAA 
GCACTCGCGA CTCCCGGAAA TGGCAAGCCA AGGCTGATTA ACCGTGCTTT GACCAAGTTG 
TTAGAAGAAT TACAAGACGC ACAAAAAGAG CGCGGTCGTT TTGACAAGTT CATTCGTTCT 
AATACTTTTC TCGATGCGGA AACGCGCATT GGTAATCGAC TTTTCTTAAA TAACCGTCTC 
GACGCCCTTA GCCATAATCA GGCGATGCTC GCCCATGGGG TGATTTATTT ATTAGAGATG 
GATGATCTGG ATTTACTGCA GCAATCCCAA GGTGAAGCGG TAACCAAAGA GTTATTAAAC 
TCGACTGTTA ACGCGATAAG CCAATTACTG CAAACCCAAG CCAACAGTAT TTTTGCCCGT 
CGTTCCCACA ATCAATTTGC CATAGTCGTG CCGCAAATCT CGTTAATCGA AGCCGACCAA 
TTTGCCAGTA AGTTGCTTAA GATATGTTTG AGCCAGCCGT TACCCGAAGT CGAGAATACC 
GATAACTTTT TCCACCTCGG ATGCGCTTAT TTTACCGCGG GCGACAATGC AGCGCAGTTA 
ATTGAAGAAG CCGATATGGC TTTGAGGGCG GCACAATTAC AGGGTAACAG TAATTGGTTT 
ATGTACGACA AAGGCGCGAT TGATGAAGAG TTTGCTAAAG GCTCGGTGCG TTGGCGTAGC 
TTTTTAGAAA ACGCATTAGT GCAACGGCGA TTCTTCCCCT TTAGCCAGCC GATAATTGAT 
TCAGATGGTA ATGAGCACCA TAAAGAGATA TTTACTCGGG CGCGGGATAA TCAAGGAGCG 
TTAATTCGTG CCACACTGTT TATTCCAATG GCGAATAAAT GTGGTTTAAT GCCGCAAGTC 
GAACGGCAAA TTATTGAGCG GGTATTATTG TTACTGTCGA ATGAATTATC GGACGGCGTG 
TCGAATACTC AAAAAAATAA GAAATCAGCG CCACAGATAT ACAGTATTAA TCTGAGTTTG 
GATTCGCTAA TGAGTCGAGC TTTTACCCAA TGGCTAAAAA CGACGCTGTT AGAATATCGC 
CATCTGACCA CGCGACTGAT TTTCGAAGTG TCGGAAGATA TTGTTATTCA ACATCAAGAA 
AAGTTACAGC CTAAATTAGA TATGATCCGT AAAATGGGCG CGAGATTATG CGTCGATCAT 
GTAGGCCAGC AGGTCGTTGG CACTTACTAT ATTCGTGAAT GTCATTTTGA TTTAATTAAG 
CTACATAGAT CGATTGTGCG GCATATTCAT TTACGCCCAG AAAACCAATT ATTCATTCGT 
AGCTTGATTG GCGGTTTGTA TCGAACGGAA GTGCAAGTTT GTGCCGAAGG GATTGAAGTC 
TTCGAAGAAT GGCAGACACT GCAAATCCTC GGCGTTGGCG CAGCGCAGGG AATGTATTTC 
AGTGAACCCA TTGAAGCTAA GTAA 

 

Protein sequence

MKFTRMLTTK LTSFWLMSLA AIAFVFLLSA MMSFVQLTYK FQQQKVAELE TMLVDQYQHQ 
PDWDLEAWLP PMLLAYNAVD FRLTLKDEVI FAYEGNLTSQ NAMVYDHVLD PKSGLRMQLT 
LTQPFEHYTF SWYEILILLV GVLAVAALVR FGYLWFSQQL DGIEELALRS RLILQGKHEQ 
ALATPGNGKP RLINRALTKL LEELQDAQKE RGRFDKFIRS NTFLDAETRI GNRLFLNNRL 
DALSHNQAML AHGVIYLLEM DDLDLLQQSQ GEAVTKELLN STVNAISQLL QTQANSIFAR 
RSHNQFAIVV PQISLIEADQ FASKLLKICL SQPLPEVENT DNFFHLGCAY FTAGDNAAQL 
IEEADMALRA AQLQGNSNWF MYDKGAIDEE FAKGSVRWRS FLENALVQRR FFPFSQPIID 
SDGNEHHKEI FTRARDNQGA LIRATLFIPM ANKCGLMPQV ERQIIERVLL LLSNELSDGV 
SNTQKNKKSA PQIYSINLSL DSLMSRAFTQ WLKTTLLEYR HLTTRLIFEV SEDIVIQHQE 
KLQPKLDMIR KMGARLCVDH VGQQVVGTYY IRECHFDLIK LHRSIVRHIH LRPENQLFIR 
SLIGGLYRTE VQVCAEGIEV FEEWQTLQIL GVGAAQGMYF SEPIEAK