Gene Sbal_3578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal_3578 
SymboltolC 
ID4845637 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS155 
KingdomBacteria 
Replicon accessionNC_009052 
Strand
Start bp4204703 
End bp4206010 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content43% 
IMG OID640120847 
Productouter membrane channel protein 
Protein accessionYP_001051923 
Protein GI126175774 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.08694e-07 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTA AGATCCATAA TTTATGCGCA GCATTAACAC TTGCGGCTTC CGCTTCAGCG 
GTGCAAGCAG ATGATTTGTT GCAAATTTAT CAACAAGCAC TGACCAGCGA CCCGCTCGTA
TTGCAAGCTC AAGCCCAGCG TAATGGTTTG TTTGAACAAA TCGAACAAAA CCGTGCACCG
CTGTTGCCAA CCATTAGTGC AAACGTCGGT TACGACAAAG CTTGGAATGA TCCGAAGGAT
GATTCAAGCG GTCTAGTAGG TAGCCTGAAA TTAAATCAAG TTATCTATGA TCACAGTGCT
TGGGTCGGTT TAAGCCTTGC TGAGAAAGCC GCTTCTCAAG CTGATTCTGC CTATGCTTCA
GCATTACAAA ACCTGATTAC TCGTATCACT ACAGCCTATT TCAACGTATT AACGGCGAAA
GACAACTACG AGTTCCAAGG TGCAGAAAAA CGCGCGATCG AACGTCAACT TGAACAAACT
AAACAACGTT TTGCAGTGGG GTTAACCGCA ATTACCGATG TGCATGAAGC CCAAGCTCAA
TATGACTTAG CCTCAGCCAC TGAAATTTTA GCTGAAAACA CACTCGCTAA TAGCTATGAA
GCCTTACGTG AAATCACTGG CATCGATCAC AAGACAATTA ACGTGTTAGA TACCAACCGT
TTCTCGGCCG TTACGCCAGC GCCAACGTCG TCAAACGAAT GGTTGAAGAT TGCTGAAACC
AATAGCGTCG ATTTGATGAC TCAACGTATC GGTAAAGATA TCGCTCAAGA AACCATTAAG
CTTTATCAAG CAGGCCACAT GCCTTCTTTA AGCTTGAATG CAGGTTACAA CAAAGGTCTT
GAGCAAAAAA CCGGTAATAT CAATGAGCCT GACTTTGATA ACGTCAGTGT CGGTGTCAAC
TTAAGCATTC CGATTTTCGA AGGCTTTAAA GTGAGCTCAC AAGTTAATCA AGCGCAATTT
CAATATGTTG AAGCGAGTGA AAAACTTGAA CAAGTTTACC GCGGTGTAGT GAAAAACGTC
CGTAATAACT ACAACAACGT AGGCGCTTCT ATCAGTTCAA TCAAAGCCTA TGAGCAATCA
GTAATTTCAT CAGAAAGTGC ACTGAAAGCC ACTCAAGCGG GCTTTGAAGT GGGTACGCGT
ACTATCGTTG ACGTATTGAA CCGTACTCGT GACTTGTACG ACTCAAAACG TAAGCTATCA
GATGCACGTT ATAGCTACAT CAACTCGGTC ATTGCCTTGA AGCAAGCTGC GGGTACATTG
AATGAAGATG ACGTGATTGC CATCAACAAT GGCTTAATTG CAGAGTAA
 
Protein sequence
MKFKIHNLCA ALTLAASASA VQADDLLQIY QQALTSDPLV LQAQAQRNGL FEQIEQNRAP 
LLPTISANVG YDKAWNDPKD DSSGLVGSLK LNQVIYDHSA WVGLSLAEKA ASQADSAYAS
ALQNLITRIT TAYFNVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SNEWLKIAET
NSVDLMTQRI GKDIAQETIK LYQAGHMPSL SLNAGYNKGL EQKTGNINEP DFDNVSVGVN
LSIPIFEGFK VSSQVNQAQF QYVEASEKLE QVYRGVVKNV RNNYNNVGAS ISSIKAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSV IALKQAAGTL
NEDDVIAINN GLIAE