Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal_3235 |
Symbol | |
ID | 4842574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS155 |
Kingdom | Bacteria |
Replicon accession | NC_009052 |
Strand | + |
Start bp | 3792806 |
End bp | 3794860 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640120493 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001051584 |
Protein GI | 126175435 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.612111 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGGCC GTTTTAAGTC ACTGACGTGG AAACAAACTA ACCTAGTCGT ATTTACTGCC CTATTTTTTG CCATTGCCAT TTTTATTGTT GAAATCGCTT TAGTCGTCGT CTCAACCAAA CAACAACTCA CGACTACGCA GCAAGAACTC CTTGATTCAG TTGAACAACC CGCAGCAAAT GCCGTCTGGG CATTGGATGA CAATTTAGCC CGTCAAACCT TAGAAGGTGC CATTAAGGTT GAGCATGTCG GCTCAGCAGT GATTGAGCTG GACGATGGTT CCATGTTTGT GTCAGTCAGC AATAATAAAA AGAATAACTC GCAGACATTT ATCAGCTTAA GTAACAAATT ATTTGATGAT CTTAAAGAAA TCTCTCGCCC GCTGTACCGA CCTTTTTATT TCGAAGGCAC CCAACAACAG CAACTCATTG GCACATTAAC GGTTTTCTAC GATACCCAAG AGCTGACAAA CACCCTTTTC TCACAGTTAA GATTTAGTTT TTTCGCCACA CTTGCCCGCG CACTCTTACT CACCTTAGTG CTTTCAGTGG TTTTCCATCG TTTCTTGACT CAACCTATCG CGCGTATCAG TGAGGCCATA GATAAGATTG AACCCGACTC ACCGGACGAA AATCTCTTAC CTATGTCCAA TGCGCACAAG GATGATGAAC TCGGCCTAGT GACCTCGAAA TTCAACCAAA TTCTTATCCA ATTTAGCCAA ACCCAATCCA AACTGCGCAA AATGGCGACC CGAGATCCGC TAACGGGTTT ACCGAACCGC ACATTATTGC TCGAAACCAT CGCAGTCACT ATCCAACGTT CGCGCGTGCA CAAACGCAGC TTTGCCTTAA TGTTTATCGA CTTAGATCGA TTTAAGAATA TTAACGATTC CCTTGGCCAC GCATTAGGCG ATCAATTCCT CGCCCGTATC GCCCGTATTC TTGAACGCTT CGTTGGCGAT AAAGGCACAG TCTCTCGCTT AGGTGGCGAT GAGTTTGTGA TTTTAGCCGA CACAGTACAC ACCCCAGATC AAGCCGCTGA CTTTGTTGAT AAGTTACTTA TCCAGCTTAA TGTCCCTATC CAATTAAATG AACATGCGAT TCATCCTGCG GCCTCAATTG GCATATCCAT TTATCCCGAA GACGGTAACA GCGCAGAAGA TTTGATACGT CATGCCGATA TTGCCATGTA CAGCGCCAAA GCTGCAGGCT CCAATCAATG GGCCTTCTTT AAACAACAGA TGACAGAACG CGCCGCTGTG CGTTTACGCA CTGAAGCATC CTTGCATGAT GCGTTAAAAA ACAACGAATT TTTGCTGTAT TTCCAACCTA AACTCGATCT GCAAACGGGC AAAGTGATTG CCTGTGAAGC TCTGATCCGC TGGCAAAAAG ATGGGCGACT CATCAGTCCG GTTTCTTTTA TTCCCGTAGC CGAAGAAACG GGGATCATCA TTCCGATTGG CCGCTGGGTG ATAGAACAAA GCTGCAAAGT CTTAAGGGAG TGGCAAAAGA AATATAACTA TGCCATCCCG ATTGCGATTA ATGTCGCCTC ACAGCAATTC GCCGACGCCA GTTTAGTACC CGATATCAAA CAGATGGCAT TACGTTATCA GATCCAGCCT GAGCTACTGG AAATTGAAAT CACTGAAACC TCGCTGATGA ACGACATTGA GCTCGCCATC GCTAAGCTTG AACAACTTAA ATCAGCAGGG TTTAGTATTG CCGTCGATGA CTTCGGCACC GGATATTCAT CACTCTCTTA CCTGCGCCAT TTGCCCATCA CCACCATGAA AATCGACCGC TGTTTCGTGT CCGATTTACC AGGGGATAGC GCAATTGCAT CGACCATTTT GATGTTAGGT AAGCAGCTTA ATTTGACCAT TGTGGCCGAA GGGATTGAAA ACGAGCAACA ATTGGATTGG TTGAAGGAGA ATCAGTGCCA AGTCGGCCAA GGTTTCTATT TTAGCCAACC CCTGCCCCAA GCGGAATTTG AAGCCCAGTA TATAGCAACA CAGACAGCAA CGATAAGCAG TCTTGATGGC TTACGTGGAG CTTAG
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Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD LKEISRPLYR PFYFEGTQQQ QLIGTLTVFY DTQELTNTLF SQLRFSFFAT LARALLLTLV LSVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH ALGDQFLARI ARILERFVGD KGTVSRLGGD EFVILADTVH TPDQAADFVD KLLIQLNVPI QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVIACEALIR WQKDGRLISP VSFIPVAEET GIIIPIGRWV IEQSCKVLRE WQKKYNYAIP IAINVASQQF ADASLVPDIK QMALRYQIQP ELLEIEITET SLMNDIELAI AKLEQLKSAG FSIAVDDFGT GYSSLSYLRH LPITTMKIDR CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKENQCQVGQ GFYFSQPLPQ AEFEAQYIAT QTATISSLDG LRGA
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