Gene Sbal_2785 details

Gene Information

• Locus tag: Sbal_2785
• Symbol: secD
• ID: 4842500
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS155
• Kingdom: Bacteria
• Replicon accession: NC_009052
• Strand: -
• Start bp: 3273691
• End bp: 3275541
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640120021
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001051141
• Protein GI: 126174992
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.000401853
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGA TGCTCGTCAT CGCCATAGGT 
TGTTTCTATG CCGTACCGAA CCTTTTTGGT GAAGATCACG CGGTGCAAGT GGTGGCGACT 
CGAGGTGCTG AAGTCACGGC ATCAACCCAA GCCAGTGTGA ACGAGCTGTT AGCCAGTAAG 
GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGTCAGT TGTTGGTCCG TGTGCAAAAT 
GCGGATCAAC AGCTACTGGC GAAAGAATTA ATTGCTGACA GCTTAGGTGA CAAGTTCACT 
GTGGCGCTCA ACTTAGCCCC AGCGACGCCT AAATGGCTCG AGTCAATGGG CGGCAGCCCA 
ATGAAACTCG GTCTCGACCT TCGCGGCGGT GTGCATTTCT TAATGGAAGT GGACATGGGC 
GAAGCGATTC GCAAGATGGA AGAGGCTAAA GTTGCCGATT TCCGTTCGCA ACTGCGCGAA 
GAGAAAATTC GTTATGCCGG TATTCGTAGC AATACCACAG GTATCGAAAT CAAGTTCCGT 
GATGCTGAAA GTCTCGCGAG TGCCGAGCGT TTCCTTAAGT CTCGCAGTAA AGATATGGTG 
TTCACTGATG CTAGCCGTGG CGAAGATTTT GCCCTGCAAG CTGTGATGAG TGACGTGTAC 
CTTAAGCAGA TTAAAGAAGA AGCACTGCAA CAAAACATTA CGACCATTCG TAACCGTGTA 
AACGAGTTAG GTGTGGCTGA GCCTGTAGTA CAACGTCAAG GCGCCGAGCG CATTATCGTT 
GAGCTGCCAG GTGTGCAAGA TACGGCTCGC GCCAAGGAAA TCTTAGGTGC AACCGCATCG 
ATTGAATTCC ACATGGTCGA TGACAAAGCT GATCCTAATG CTGCGCAATC AGGCCGTTTA 
CCAGCGGGTT CTGAAGTGTA CCAGCGCCGC GAAGGTGGCA CTGTGATATT GAAGAAAGAA 
GTTATGCTGA CCGGTGATCA TATCACGGGC GCACAACCTA GCTTTGACCA GTACAGTCGT 
CCACAGGTTA GCATCAACCT TGATGCGAAA GGCGGCACCA TTTTCTCTGA CGTGACCAAA 
GACAACATAG GCAAGCCTAT GGCGACATTG TTCATCGAAT ATAAAGACAG TGGTGAGCGC 
AATGCCGACG GCAGCGTTAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT AGCGACCATT 
CAAGCGCGTT TAGGCCGTAA CTTTGTGATC ACTGGCTTAA GCCATGGTGA AGCTCAAAAC 
CTCGCACTAT TACTGCGTGC GGGTGCCTTG ATTGCCCCAG TGTCGATTGT TGAAGAACGT 
ACCATTGGTC CAAGCTTAGG TGCTGAAAAC ATTCAAAACG GTGTGCAAGC TATGGTTTGG 
GGTATGGCGG TTGTCTTACT CTTTATGCTG GTTTACTACC GTGGTTTTGG TCTTATCGCC 
AACATAGCGT TAACCGCAAA CTTAGTCATG GTGGTGGGCG TAATGTCTAT GATCCCTGGC 
GCAGTATTAA CCCTACCGGG TATTGCCGGT ATGGTGTTGA CTGTGGGTAT GGCGGTTGAT 
GGTAACGTGC TGATCTATGA GCGTATCCGT GAAGAATTAC GTGCGGGCCG TAGCGTCCAG 
CAGGCCATCC ATGAAGGTTA TGGTAACGCA TTCTCCACCA TCGCCGATGC GAACATCACC 
ACTTTCCTAA CGGCGCTGAT TCTGTTTGCC GTAGGTACAG GCGCTGTTAA AGGCTTCGCG 
GTGACCTTGA TGATAGGTAT TGCGACTTCC ATGTTTACCG CAATCGTGGG TACTCGCTCA 
ATCGTTAACG CGATTTGGGG TGGTAAGCGC GTGAAGACTC TGTCTATCTA A 

 

Protein sequence

MLNKYPMWKN IMVMLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ASVNELLASK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKEL IADSLGDKFT VALNLAPATP KWLESMGGSP 
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRS NTTGIEIKFR 
DAESLASAER FLKSRSKDMV FTDASRGEDF ALQAVMSDVY LKQIKEEALQ QNITTIRNRV 
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRL 
PAGSEVYQRR EGGTVILKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSDVTK 
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN 
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IQNGVQAMVW GMAVVLLFML VYYRGFGLIA 
NIALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ 
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS 
IVNAIWGGKR VKTLSI