| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1848 |
|---|
| Symbol | |
|---|
| ID | 4845930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 1842711 |
|---|
| End bp | 1843808 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640116553 |
|---|
| Product | L-tyrosine decarboxylase |
|---|
| Protein accession | YP_001047756 |
|---|
| Protein GI | 126179791 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGAAG TTGGTTGCCC TGAGGAAGAC CTTTTCTCCT TCCTCTCGTC GAAACGGCGG
GAGGATCTCG GCTACCGGAA TATCCTGAGT TCGATGTGCA CGCCGCCCCA CCCGGTCGCG
GCGCGGGCGC ACGCGATGTT CCTCGAGACC AACCTCGGCG ACCCAGGGCT CTTCCCCGGG
ACGGCAGCGC TCGAGGATCT CCTCGTCCGG AGGCTCGGCA CCCTGATGCA CCTTCCTGAC
GCCGGGGGGT ACGCGACGAG CGGCGGAACG GAATCGAACA TCCAGGCGTT CCGGATCGCA
AAGAAACTCA AATCCGCGAA GTCCCCGAAC GTGGTGGTTC CGGCGTCGAG CCATTTTTCG
TTCACGAAGG CCTGCGACAT CCTCGGGCTC GAGATGAGGA CGGTGCCGCT CGATGCCGGG
TTCCGGATGG AGACGGAGGC GGTCGACGGC CTCATAGATC ATAACACGGT CGCTCTCGTC
GGGGTGGTCG GGACGACGGA GTACGGCATG GTCGACCCGA TCAGCCGGCT CTCGGAGATC
GCCCTCGACC GGAACGTCTT CCTTCACGTC GACGCCGCGT TCGGCGGGAT GGTGGTCCCG
TTCCTCGACC GGCCCGTCCC GTTCGATTTC AGCCTCCCCG GCGTCTCCTC CATCTCCGTC
GACCCTCACA AGATGGGGAT GAGCACCATC CCGGCAGGCT GCCTCCTCAC ACGGAGCGCG
GAATGGTTCT CGTGCCTCAA CGTCGACACC CCTTACCTGA CGGTGAAGCG GGAGTGCACC
CTCGCCGGCA CCCGGCCGGG CGCGTCGGTG GCCGCGGCGA TCGCCGTCCT CGAGTACCTG
GGGATGGACG GCATGCGGGC GGTGGTCGCC GGGTGCATGG AGAACTGTCG CCGGCTGATC
GAGGGGATGG AGACGCTCGG TTACCCGAGG GCGGTGACCC CGGACGTCAA CGTGGCGACG
TTCTCCTGCG AGCGTGCACC CGTCGGGTGG CGGGTCTCGA CGACCCGGAA CGGGCATATG
CGGATCGTCT GCATGCCTCA CGTCACCCGC GACGTGGTCG AGCAGTTCCT TGTAGATATG
GGTGATACAG ATGCTTGA
|
|---|
| Protein sequence | MREVGCPEED LFSFLSSKRR EDLGYRNILS SMCTPPHPVA ARAHAMFLET NLGDPGLFPG
TAALEDLLVR RLGTLMHLPD AGGYATSGGT ESNIQAFRIA KKLKSAKSPN VVVPASSHFS
FTKACDILGL EMRTVPLDAG FRMETEAVDG LIDHNTVALV GVVGTTEYGM VDPISRLSEI
ALDRNVFLHV DAAFGGMVVP FLDRPVPFDF SLPGVSSISV DPHKMGMSTI PAGCLLTRSA
EWFSCLNVDT PYLTVKRECT LAGTRPGASV AAAIAVLEYL GMDGMRAVVA GCMENCRRLI
EGMETLGYPR AVTPDVNVAT FSCERAPVGW RVSTTRNGHM RIVCMPHVTR DVVEQFLVDM
GDTDA
|
|---|
| |