Gene Memar_1823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_1823 
Symbol 
ID4847803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand- 
Start bp1811395 
End bp1812036 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content67% 
IMG OID640116523 
ProductTPR repeat-containing protein 
Protein accessionYP_001047731 
Protein GI126179766 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.510449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGACTA GAGATGAGAA TCCCGGAAGA TGGTATCACA GAGGTCAGGG TCTCTGCACC 
ACCAGCTGTT TCAACGAGGC GGTCGTCTGT TACGATAAGG CACTTGAACT ATCCCCCGAC 
GACCCCGTTC TCTGGCGGAG GAGGGGGTTT GCTCTTATCA GGGCCGGCCG CTACGAGGAG 
GCGGTCGCCT CTTTTGACCG GGCGCTCGCG CTCGACCCCG AAGACGCGAC GGCATGGCAG 
AGAAAGGGCT ACGTTCTCGC GCACCTCGGG GAGCACGATA GCGCCGTCGC CTGCTGTGAC 
CGGGCGCTCA TGCTGGATCC GGAGCATATC CTCGCCTGGC AGAGCCGGGG CTGGGTGCTC 
GGGGCCATGT GCCGCTACGA TGAGGCGGCA GAGTGCTACG AGGCGGTTCT CTCGATCGAC 
CCGGAGCGGG GATCGGCGGC CTGGCACCGG GACCGGATGC GGGAGAGAAG GGACATCGAA 
GCGCTCGTGT CCGAGATCCG GGAGGCCGGG CGCGTCATTG AGGTGCCGGC CTGCATCCGC 
GACGTCGCCC GGGAGCGTGA CTACGGCAAT GTGGATCTCG CGCGGGCGGT GCTCCGGGAA 
CTCGCCCGCC GGGTGGAGAG GGCGGCAGTC CCGCGGCGAT GA
 
Protein sequence
MATRDENPGR WYHRGQGLCT TSCFNEAVVC YDKALELSPD DPVLWRRRGF ALIRAGRYEE 
AVASFDRALA LDPEDATAWQ RKGYVLAHLG EHDSAVACCD RALMLDPEHI LAWQSRGWVL 
GAMCRYDEAA ECYEAVLSID PERGSAAWHR DRMRERRDIE ALVSEIREAG RVIEVPACIR 
DVARERDYGN VDLARAVLRE LARRVERAAV PRR