| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1656 |
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| Symbol | secD |
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| ID | 4847049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanoculleus marisnigri JR1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009051 |
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| Strand | + |
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| Start bp | 1662147 |
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| End bp | 1663604 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640116350 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001047565 |
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| Protein GI | 126179600 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00710078 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACGGCG AAACCATCAA GAATCTCGTC AAAGACTGGC GGATCGCCCT GGTGCTCCTG
CTGGTCGTCG GCTCCCTTGT CGGTATCTAC CTCGCTCCCC CGAGCCCGGA GAAGGGTATC
GAGGGGAACC TCCAGTTCGG CCTCGATCTC GAGGGCGGTT CGTGGCTGCA GATGGAGTTC
CAGTCCGTGG TCGTGGCATT CTCGACCGAC GGATCGGTCG GAGACCTCAT GGACGACCTG
CGGACGGATC TCGAGACCGA GGTCATCCGC ATCGACGAGA ACCACCTCGA GATCCGAAAG
AGCGTCACCC GTGCCGACCT CGAACCGATC TTTGCGGAAT CGGGCGCCTC GATCGTAACC
CACCAGAAGG GCGTATCCGC GTTCACCGCA GACGAGGTGA AGAGGATCCT GAACGAGAAG
GTGAACGCTC TCGGGATGCA GGACGCGAGG ATCAACCTGC TCACCCCGAC CGGAAGCGAG
TTCCCGCAGT ACGTGCGGAT AGAACTCGCC GGCGTGGATA TGGCGACGGC GCAGGATATC
GTCGGCCAGC AGGGCCTGTT CGAGATACGG GTCCAGACCA CAGGGAACGA GACCGAGCAC
GTCCTCTACG GTGACCAGAT CACCAGCGTC GGCGTGCCGC AGAGGGATTC CGACGGCACA
TGGAGCGTCG GGTTCTCGTT CACCGAGACG GGCGCAGAGG CCTTCCGTGA GGCCGCCATC
GAATCCGGAG CGGTCGACAA CCCGGACGCC CACCACCTCG TGATGATCCT CGACAACGAG
ACCGTCTACA GCGCCCCCCT CGCCGGAAAC CTTGTGAGCG AGCTCCGGGC GGGCCCGGTC
AGGTCGCTCT CCGCAAGCAC CGGCACCGGC GACGCCGGGC TCGAGGATGC GATGACGCTC
CAGATCCACC TGCGGGCCGG CGCACTGCCG GTGCAGGTGG ATATCGTCGG GTCCGGTTCC
GTCCCGGCGG CGCTTGGCGA ACAGTTCAAG ATGACGGTCG CCATCGCCGG GCTGCTCGCG
CTGCTCACCG TAGCGGTCGT CGTCTACTAC CGTTACCGCG AGCCCTCGAT CGTGATCCCG
ATGGTCGCGA TCAACCTTGC AGAGATCATC ATCCTGCTCG GGATTGCCCG GTTCATCATC
CAGCTCGACC TCGCCACCAT CGCCGGTCTG ATAGCGGTGG TGGGTACCGG CATCGACCAG
CTCGTCATCA TCACGGACGA GGTTCTCCAC GAGGGGCGTG TCCCGTCGCC GAACCTCTAC
ATGAAACGCT ACGGGCGGGC GCTCGGTATC ATCGCCGTCG CCGCCGCGAC GGTCTTCATC
GCCATGCTCC CGCTGGCGCT GATGGATCTC TCCACTCTTC GGGGCTTTGC AATCATCACC
ATACTCGGTG TCCTGATCGG CATCCTGGTC ACGAGGCCCG CGTACGGAAA GATAATCATG
GCGATCCTCT CAAAATAA
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| Protein sequence | MNGETIKNLV KDWRIALVLL LVVGSLVGIY LAPPSPEKGI EGNLQFGLDL EGGSWLQMEF
QSVVVAFSTD GSVGDLMDDL RTDLETEVIR IDENHLEIRK SVTRADLEPI FAESGASIVT
HQKGVSAFTA DEVKRILNEK VNALGMQDAR INLLTPTGSE FPQYVRIELA GVDMATAQDI
VGQQGLFEIR VQTTGNETEH VLYGDQITSV GVPQRDSDGT WSVGFSFTET GAEAFREAAI
ESGAVDNPDA HHLVMILDNE TVYSAPLAGN LVSELRAGPV RSLSASTGTG DAGLEDAMTL
QIHLRAGALP VQVDIVGSGS VPAALGEQFK MTVAIAGLLA LLTVAVVVYY RYREPSIVIP
MVAINLAEII ILLGIARFII QLDLATIAGL IAVVGTGIDQ LVIITDEVLH EGRVPSPNLY
MKRYGRALGI IAVAAATVFI AMLPLALMDL STLRGFAIIT ILGVLIGILV TRPAYGKIIM
AILSK
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