Gene Memar_1524 details

Gene Information

• Locus tag: Memar_1524
• ID: 4847001
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 1526996
• End bp: 1527517
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640116216
• Product: transcription factor TFIIE, alpha subunit
• Protein accession: YP_001047435
• Protein GI: 126179470
• COG category: [K] Transcription
• COG ID: [COG1675] Transcription initiation factor IIE, alpha subunit
• TIGRFAM ID: [TIGR00373] conserved hypothetical protein TIGR00373

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTATCCG TCACTGAACT GTTGGACGAT CCGGCAATCA ATGCCTATAT CCTGCGCATG 
ATCGGGGAGG AGGGAATCGA ACTTCTCAGG CGGTTCCCCG AAGGAGGAGA GCACAGTGAC 
GAGGAACTTG CCGAGATGAC CGGGGTCAAC CTCAACACCG TCCGCCACAC CCTTTATACG 
CTCTACGAGA GGCGCCTCGC CGAGTACCGG CGACTGAAGA ACACCGAGAC CGGCTGGCTC 
ACCTACCTCT GGCACCTCCG CCTCGACCGT GTCCACGACG TGCTCGAAGA GCAGGTCCGG 
GACGCGCTCG AGCACCTCGA CGCCCGGCTC GCCTACGAGG AGAAGAACGA CTTCTACATG 
TGCAGGAACT GCAGCGTCGT CTACACCTTC ACGGACGCGG CGAACTGGAA CTTCGAGTGT 
CCGAACTGCG AGGAGATGCT CGAACATTTC GACAACGAAC TCATCGCCGT CGCTCTCAGG 
AAGAGAATCG ACAGGATCAA GGAGAGCCTC GGGAGTGCGT GA 

 

Protein sequence

MVSVTELLDD PAINAYILRM IGEEGIELLR RFPEGGEHSD EELAEMTGVN LNTVRHTLYT 
LYERRLAEYR RLKNTETGWL TYLWHLRLDR VHDVLEEQVR DALEHLDARL AYEEKNDFYM 
CRNCSVVYTF TDAANWNFEC PNCEEMLEHF DNELIAVALR KRIDRIKESL GSA