Gene Memar_1265 details

Gene Information

• Locus tag: Memar_1265
• ID: 4847831
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: -
• Start bp: 1244733
• End bp: 1246661
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640115955
• Product: glycogen branching enzyme
• Protein accession: YP_001047177
• Protein GI: 126179212
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0296] 1,4-alpha-glucan branching enzyme
• TIGRFAM ID: [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.24267
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAGCAGG CGTTGCCCGA CATCACGAAG ACCGGGACTC TCGTCACCGA CTACGATGTC 
TACCTCTTCC GGCAGGGTAA CCACACCCGC CTCTACGAGA AGCTGGGAGC GCATCCCGCC 
GTCGCCGACG GTGTGCAGGG GACGTTCTTT TCCGTCTGGG CGCCGAACGC CGCGGAAGTC 
TCGGTCATCG GGGACTTCAA CGGATGGAAG GCGGGCGAAC ACCCGCTCAC GGCGCGGGGC 
GACAACTCCG GCATCTGGGA GGGGTTCGTC CCGGAACTCG GCCAGGGGGC GCTCTACAAA 
TACCACATCA GGAGCAGGTA CCGCGACTAC TGCGTGGAGA AGGGCGACCC GTTCGCCCGC 
TTCTGGGAGG TTCCGCCGAA GACCGCGTCC GTTGTCTGGG ACACTGCCTA CGCCTGGCGC 
GACCGGTCGT GGATGCGCTG CCGGGAAGAG GCGAACACCC CGGACGCCCC GGTATCCGTC 
TATGAGGTTC ATATCGGTTC GTGGCGGATG CCGGAGGGGG AGAGACGGTG CACGAGCTAC 
CGGGAGCTTG CAACCGAACT CGCCGACTAC CTGCTCGAGG CGGGGTTCAC GCACGTCGAG 
TTTCTCCCGG TCATGGAGCA TCCGCTCTAC GCCTCCTGGG GCTACCAGAC GCTCGGCTAC 
TTTGCCCCCA CGAGCAGGTA CGGCACCCCG CAGGACTTCA TGCACCTCGT CGAGCACCTC 
CACCTGCGCG GGATCGGGGT AATCCTCGAC TGGGTGCCGT CCCACTTCCC GTCCGACGGC 
TACGGCCTCT CCTACTTCGA CGGCACCTAC CTCTACGAGC ATGCCCTCCC CGGCCGGCGC 
TACCACCCGG AATGGAAGAG TTACGTCTTC AATCTCGCGA GGAACGAGGT CAGGTCGTTT 
CTCATCAGCA GCGCCGTCTT CTGGCTCGAA CGCTACCACG CGGACGGTCT CCGGGTCGAC 
GCGGTCTCTT CGATGCTCTA CCTCGATTAC GCCCGGAGCG CCGGAGAATG GACGCCGAAC 
GTCTACGGCG GGCGGGAGAA CCTCGAGGCG ATGGTGTTTC TCCGGAAGGT GAACGACACT 
GTCCACGCCA ACTTCCCGGA CGTCCTCGTC ATCGCCGAGG AGGCGACCGC CTGGCCGGGG 
GTGACCGCCC CGACCGCGAC CGGGGGGCTC GGGTTCGACC TGAAGTGGAA CATGGGCTGG 
ATGCACGATG CGCTGGACTA CTTCACGCTC GACCCGGTCT TTCGGAAGTA CCGCCCCGAT 
CTCCTGACGT TCAGCATATG GTACGCGTTC TCCGAGCGTT ATGTCCTCCC CCTCTCGCAC 
GACGAGGTCG TTCACGAGAA AAGTTCGCTC ATCGGGAAGA TGCCCGGCGA CGAGTGGCGG 
AAACGGGCGA ATCTTCGTCT CCTATATGGG TATATGTTCA CGCACCCGGG CAAGAAACTC 
CTCTTCATGG GGGGCGAGTT CGGGCAGTGG CCGGAGTGGA GCCACGAGAC CGGGCTCGAG 
TGGGACCTCC TGCAGTACGC CCCGCACCAG GGGATCCTCC GGTGGGTTAC CGATTTGAAC 
CGCCTCTACC GGCGGAAGCC TGCCCTCCAC GAGCGGGACG CCGATCAGGC GGGGTTCGAG 
TGGGTCGATT TCTCGGACGT CGAGAAGAGC GTCGTCAGCT ACCTGCGGCG GGGGCGGTCG 
GCCGACGACG TCGTCCTGGT CATCTGCAAC TTCACCCCGG TGCCGCGCTA CGACTACCGG 
ATCGGCGTCC CGTTCGGCGG GTTCTGGAAA GAGGTGCTCA ACAGCGATGC GGTCGAGTAC 
GGCGGGAGCG GTGTCGGGAA CCTCGGCGGG GTGGAAGCGG AGCGAATCCC GGCCCACGGC 
CGGTCGTGTT CGCTTCCGCT CACCCTGCCC CCGCTCGGGG TGGTCGTCTT CTGTCCCGAG 
GGGGCGTGA 

 

Protein sequence

MQQALPDITK TGTLVTDYDV YLFRQGNHTR LYEKLGAHPA VADGVQGTFF SVWAPNAAEV 
SVIGDFNGWK AGEHPLTARG DNSGIWEGFV PELGQGALYK YHIRSRYRDY CVEKGDPFAR 
FWEVPPKTAS VVWDTAYAWR DRSWMRCREE ANTPDAPVSV YEVHIGSWRM PEGERRCTSY 
RELATELADY LLEAGFTHVE FLPVMEHPLY ASWGYQTLGY FAPTSRYGTP QDFMHLVEHL 
HLRGIGVILD WVPSHFPSDG YGLSYFDGTY LYEHALPGRR YHPEWKSYVF NLARNEVRSF 
LISSAVFWLE RYHADGLRVD AVSSMLYLDY ARSAGEWTPN VYGGRENLEA MVFLRKVNDT 
VHANFPDVLV IAEEATAWPG VTAPTATGGL GFDLKWNMGW MHDALDYFTL DPVFRKYRPD 
LLTFSIWYAF SERYVLPLSH DEVVHEKSSL IGKMPGDEWR KRANLRLLYG YMFTHPGKKL 
LFMGGEFGQW PEWSHETGLE WDLLQYAPHQ GILRWVTDLN RLYRRKPALH ERDADQAGFE 
WVDFSDVEKS VVSYLRRGRS ADDVVLVICN FTPVPRYDYR IGVPFGGFWK EVLNSDAVEY 
GGSGVGNLGG VEAERIPAHG RSCSLPLTLP PLGVVVFCPE GA