| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1198 |
|---|
| Symbol | |
|---|
| ID | 4848419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1173051 |
|---|
| End bp | 1173695 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640115888 |
|---|
| Product | proteasome endopeptidase complex |
|---|
| Protein accession | YP_001047111 |
|---|
| Protein GI | 126179146 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0638] 20S proteasome, alpha and beta subunits |
|---|
| TIGRFAM ID | [TIGR03634] proteasome endopeptidase complex, archaeal, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.156853 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGATA CTTCCCAGGA AATAATGAAA GGTACAACTA CCGTAGGACT GATCTTCGAT
GGCGGCGTGG TCCTTGCAAC GGAGATGCGA GCGACGATGG GGAACATGAT CGCAAGCAAG
CGTGCGAAGA AGATCTACCA GATCACGCCG AGGATCGGCC TCACGACCGC CGGCGGCGTC
GGCGACGCAC AGCAGCTCGT CCGGATCCTG CAGGTCGAGT GCAACCTCTT CGAGATGCGC
CGCGGCAAGA CCATGTCTGT CGGTGCCGCA TCGACCCTGC TCTCGAACTA CCTGAACCAG
AACCGCTACT ATCCCTACTA CGTCCAGCTC CTGATGGGCG GGTTCGACGA CGAGGGGCCG
AGCGTCTACT CCGTCGACGC CATGGGCGGG GCGACCAAGG AAGAGGATAT CGTCGCCACC
GGCTCGGGCT CCCCCTTCGC CTACGGCGTG CTCGAAGACC AGTATCGGGC CGGCATGAAG
GAGGACGACG CGAAGGATCT CGCCGTCCGT GCCGTCAGAT CGGCGATGCG TCGTGACTCC
GCATCCGGCG AGGATATCAT GGTGGTCGTG ATCACGAAGG ACAAATATGA AGAACACATC
GAGAGCGGGT TGCAGAGGCC ATCGGCAGCC CGCCCAACAC TCTGA
|
|---|
| Protein sequence | MLDTSQEIMK GTTTVGLIFD GGVVLATEMR ATMGNMIASK RAKKIYQITP RIGLTTAGGV
GDAQQLVRIL QVECNLFEMR RGKTMSVGAA STLLSNYLNQ NRYYPYYVQL LMGGFDDEGP
SVYSVDAMGG ATKEEDIVAT GSGSPFAYGV LEDQYRAGMK EDDAKDLAVR AVRSAMRRDS
ASGEDIMVVV ITKDKYEEHI ESGLQRPSAA RPTL
|
|---|
| |