Gene Memar_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_0048 
Symbol 
ID4846600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp47667 
End bp48770 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content65% 
IMG OID640114719 
Productradical SAM domain-containing protein 
Protein accessionYP_001045965 
Protein GI126178000 
COG category[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 
TIGRFAM ID[TIGR00423] radical SAM domain protein, CofH subfamily
[TIGR03551] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTGTA TGCCGCCGCC ACTGCGAGAG ATACTTGACG ACGTGCTTGC CGGCCACCGG 
CTCACGGAAG AGGAGGCGGT CCGCCTCCTT GCGACGCGCG ACCGGGGCGT CTGGGAAATT
GCCGCCGCCG CGAACGAACT CCGCGAGCGG AAAGTCGGCA ACGTCGTCAC CTACGTCCGC
AACCAGAACA TCAACGTCAC CAACCTCTGC GTGAACGCCT GCGGGTTTTG CGGATTCTCC
CGAAAGCCGG GCGACGCCGA TGCCTTCTTT TACGGCGAGA CCGCGGTGCG GGGGAAGGCG
CGGGAGGCGC GCGAGCGCGG CGTTACCGAG GTCTGCACGG TGAGCGGGCT CCACCCGGAG
TTCGACGTCC AATCCTACGC CGAGATCTAC TCCTGGATAC GGGACGAGGT TCCGGGAGTA
CATATCCACG CGAGCAACCC GATGGAGGTG GCATATGCCG CGAGAAGGAG CGGCATCTCC
ACCCGGGAAG TGATGGAACT GATGAGGGGC GCGGGTCTCT CCACCCTCTG CGGTACCGCG
GCCGAGATCC TGGTCGACGA TGTTCGTCGG GTGATCTGTC CCGACAAGAT TGACACGGGG
TCCTGGGCCC GGATCATCAG AGAGGCGCAT GGTCTCGGCA TCCGGTCGAC GGCGACGATC
ATGTACGGCC ACTGCGAGAG CGAGGCGGAT CGCGCCCGGC ATCTTAACAT CCTCCGCGAG
ATCCAGGACG AGACCCACGG GTTCACGGAG TTCGTGCCCC TCTCGTTCAT CCACAAAAAT
ACCCCTCTCT ACCGGGCGGG GCTCGCCCGG GCGGGGGCGA CCGGCAGAGA AGACCTCCTG
ATGTTTGCGG TCGCCCGGCT CTTCCTCGAC AACTTCGACC ACATCCAGGC TTCCTGGGTG
AAGGTCGGGA CGAAGATGGC GGAGATGGCG CTTCTTTCGG GTGCAGACGA CCTCGGCGGG
ACGCTCTTCG AGGAGAGCAT ATCCCGGGAA GCGGGCGCCC GGGATACCGA TTATCTGGAT
CCGGCCGAGA TGCGGCGGAT GGCCGAGGAT CTCGGCCGGG TACTCCGCCA GCGGACGACG
ACCTATGCTC TTCTTCCGGG CTGA
 
Protein sequence
MKCMPPPLRE ILDDVLAGHR LTEEEAVRLL ATRDRGVWEI AAAANELRER KVGNVVTYVR 
NQNINVTNLC VNACGFCGFS RKPGDADAFF YGETAVRGKA REARERGVTE VCTVSGLHPE
FDVQSYAEIY SWIRDEVPGV HIHASNPMEV AYAARRSGIS TREVMELMRG AGLSTLCGTA
AEILVDDVRR VICPDKIDTG SWARIIREAH GLGIRSTATI MYGHCESEAD RARHLNILRE
IQDETHGFTE FVPLSFIHKN TPLYRAGLAR AGATGREDLL MFAVARLFLD NFDHIQASWV
KVGTKMAEMA LLSGADDLGG TLFEESISRE AGARDTDYLD PAEMRRMAED LGRVLRQRTT
TYALLPG