| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3807 |
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| Symbol | |
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| ID | 4898670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009050 |
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| Strand | - |
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| Start bp | 937048 |
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| End bp | 938703 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640114411 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001045659 |
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| Protein GI | 126464546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00825508 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.301611 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATG CCACGATAAG AACCGAGCCG CTGCCCGAGG AGGCGATACC CGCCCCCGAA
GGCCCCACCC AGATCATCGA CACCGACTAC GAGATCGGTC AGGACAACAT CAGCTACCGA
CGACGCTTCG TCTTCGAACT CGACATCCAC AACGTCGTCT TCAGCGTGTC GGCCCTGACC
ATCGTGGCCT TCACCTTCCT CACGCTGATG TTCCAGACCA CGCTCGGTCC GGTCTTCGCC
GCCGTCCGGG ACGCGCTGAC CTCGAACCTC GCCTGGTTCT TCCTGCTGGC AGGCAATGTC
TTCGTCCTGC TCTGCGTCGT GCTGATCTTC CTGCCGCTGG GCCGGATCCG GCTGGGCGGA
CCCGACGCCA CGCCGGACTA CAGCCGCCTC TCGTGGTTCT CGATGCTGTT CGCGGCCGGC
ATGGGCATCG GCCTCATGTT CTACGGCGTG TCCGAGCCGC TGGGCAACTA CACCGCCGCC
TTCACCGGCC CGGTGTTCGA GAACGGCGTG CGCACCGACT GGTCGCCGCT CAACGGGGCG
CCCGGCGATA CCGAGGCCGC CCGGCGTCTC GCCATGGCGG CCACGATCTT CCACTGGGCG
CTGCACCCGT GGGCGATCTA TGCGGTCGTC GCTCTCTCGC TCGCGCTCTT TGCCTACAAC
AAGGGCCTGC CGCTGACGCT GCGCTCGGTC TTCTATCCGA TCTTCGGCGA GCGCGTCTGG
GGCTGGCCGG GCCATGTCAT CGACATCCTC GCCGTCTTCG CCACGATCTT CGGCCTCTCG
ACCTCGCTCG GGATCGGCGC GCAGCAGGCG GGAGCCGGGC TCGACTTCCT GTTCGGCCTG
CCCTCGACCG TCGGGGTGAC CGTCTTTCTC GTGATCGTCA TCACCGGCAT CGCGACGGCT
TCTGTCATCG CGGGCATGGA CAAGGGCGTG AAACGCCTGT CCGAGGCGAA CATGGCGCTG
GCCTTCCTGC TGCTGATGTT CGTGATCCTC GTCGGGCCCA CGCTGCAGAT CGTGCGCGGC
TTCTTCCTGA ACCTTCTGGC CTATGTGGAA TATCTGCCGG CGCTGTCGAA CCCGTTCGGG
CGCACGGACG ACAACTTCCG CCACGGCTGG ACCGCCTTCT ACTGGGCCTG GTGGATCAGC
TGGTCGCCGT TCGTGGGCAT GTTCATCGCC CGTGTGAGCC GCGGCCGCTC GGTGCGCGAG
TTCCTGATCG CGGTGCTGCT CATCCCGTCC ATCGTCTCGA CGATCTGGAT GACCGCTCTG
GGCGGCACCG CCATCAGTCA GGTGGTGAAC GAGGGGCTGA GCTCGGTGCA GGATGCAGCC
CTCGAGATCC AGCTCTTCGA GATGCTCTCG CACCTGCCTC TCACGCAGAT CACCTCGATG
ATCGGGATCG TGCTGGTGAT CGTCTTCTTC GTCACCTCGT CGGACTCGGG CTCGCTGGTG
ATCGACACGA TCGCGGCGGG CGGCAAGGTC AATGCGCCGG TGCCGCAGCG GGTGTTCTGG
GCCACCTTCG AGGGGCTGGT GGCTATCGCG CTCCTGCTCG GAGGCGGATT GGCCGCGCTG
CAGGCGATGG CGGTCTCGAC CGGCTTCCCC TTCACCATCG TGCTGCTCGG CGCCTGCTAC
GCCCTGATCC GGGGCCTCGC GGCCGAACCG CGCTGA
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| Protein sequence | MADATIRTEP LPEEAIPAPE GPTQIIDTDY EIGQDNISYR RRFVFELDIH NVVFSVSALT
IVAFTFLTLM FQTTLGPVFA AVRDALTSNL AWFFLLAGNV FVLLCVVLIF LPLGRIRLGG
PDATPDYSRL SWFSMLFAAG MGIGLMFYGV SEPLGNYTAA FTGPVFENGV RTDWSPLNGA
PGDTEAARRL AMAATIFHWA LHPWAIYAVV ALSLALFAYN KGLPLTLRSV FYPIFGERVW
GWPGHVIDIL AVFATIFGLS TSLGIGAQQA GAGLDFLFGL PSTVGVTVFL VIVITGIATA
SVIAGMDKGV KRLSEANMAL AFLLLMFVIL VGPTLQIVRG FFLNLLAYVE YLPALSNPFG
RTDDNFRHGW TAFYWAWWIS WSPFVGMFIA RVSRGRSVRE FLIAVLLIPS IVSTIWMTAL
GGTAISQVVN EGLSSVQDAA LEIQLFEMLS HLPLTQITSM IGIVLVIVFF VTSSDSGSLV
IDTIAAGGKV NAPVPQRVFW ATFEGLVAIA LLLGGGLAAL QAMAVSTGFP FTIVLLGACY
ALIRGLAAEP R
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