| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3393 |
|---|
| Symbol | |
|---|
| ID | 4898395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009050 |
|---|
| Strand | - |
|---|
| Start bp | 447128 |
|---|
| End bp | 448033 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640113990 |
|---|
| Product | 5-dehydro-4-deoxyglucarate dehydratase |
|---|
| Protein accession | YP_001045258 |
|---|
| Protein GI | 126464145 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCCGC AACAGATCAA GGCGGCCCTC GGCTCCGGCC TGCTCTCCTT CCCCGTCACG
CCGTTCGACG CCGAGAACAG GTTCGCCGCC GCCCCCTACC AGAAGCACGT CGAGTGGCTG
TCCGGCTTCG ACGCGCCGGT TCTCTTCGCC GCGGGCGGCA CCGGAGAGTT CTTCTCGCTG
ACCCCTGACG AGATCCCCGC CATCGTCAGG GCCGCCAAGG AGAGCGCCGG CAAGACCGCC
ATCGTCTCGG GCTGCGGCTA CGGGACCGAG ATCGCCCGGG GCATCGCGCG CTCGGTCGAG
GCGGCGGGCG GCGACGGCAT CCTGCTGCTG CCGCATTACC TGATCGACGC GCCGCAGGAA
GGGCTCTACG CCCATGTCAA GGCGGTCTGC CAGGCCACCG GCATGGGCGT CATGGTCTAC
AACCGCGACA ATGCCGTGCT GCAGGCCGAC ACGCTGGCGC GGCTCTGTGA CGACTGCCCG
AACCTCGTGG GCTTCAAGGA CGGCACCGGC GACATCGGCC TCGTGCGCCA GATCACCGCG
AAGATGGGCG ACCGGCTGAC CTATCTCGGC GGCATGCCGA CGGCGGAGCT CTTTGCCGAG
GCCTACCTCG GAGCGAGCTT CACCACCTAC AGTTCGGCGG TGTTCAACTT CGTCCCGGCG
CTGGCCAACA AGTTCTACGC CGCGCTGCGG GCCGGGGATC GCGCCACCTG CGAGAGCATC
CTCAACAGCT TCTTCTACCC GTTCATGGAG CTCCGCTCGC GCCGCAAGGG CTATGCGGTC
GCGGCGGTCA AGGCGGGCGT GCGGCTGGTG GGCTTCGACG CGGGCCCGGT GCGGGCGCCG
CTCTCGGATC TGACCGGCGA GGAGGAAGAG ATCCTCAAGG CCCTGATCGA CGCGCATCGG
GAATGA
|
|---|
| Protein sequence | MDPQQIKAAL GSGLLSFPVT PFDAENRFAA APYQKHVEWL SGFDAPVLFA AGGTGEFFSL
TPDEIPAIVR AAKESAGKTA IVSGCGYGTE IARGIARSVE AAGGDGILLL PHYLIDAPQE
GLYAHVKAVC QATGMGVMVY NRDNAVLQAD TLARLCDDCP NLVGFKDGTG DIGLVRQITA
KMGDRLTYLG GMPTAELFAE AYLGASFTTY SSAVFNFVPA LANKFYAALR AGDRATCESI
LNSFFYPFME LRSRRKGYAV AAVKAGVRLV GFDAGPVRAP LSDLTGEEEE ILKALIDAHR
E
|
|---|
| |