| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3133 |
|---|
| Symbol | |
|---|
| ID | 4898274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009050 |
|---|
| Strand | - |
|---|
| Start bp | 151824 |
|---|
| End bp | 154127 |
|---|
| Gene Length | 2304 bp |
|---|
| Protein Length | 767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640113735 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001045005 |
|---|
| Protein GI | 126463892 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.054847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.114782 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGG CCCGCGAAAT CACCCTGTCC CTCCCCGCTG CGGCCGAGGA TCTATGGTTC
TCGGCGCTCG AGGGCGAGGA CGGGCTGGGG CGCCCGTTCC ACTACGAGTT GCTCCTCGCC
AGCAAGTCGC TCGATCTCGC CGCGGCCGAC ATCCTCGGCA CGCCGGTGCT GGTGACGGTG
CGGGGCGAGG TGCCGCGCCA TTTCCACGGC ATTGCCACCG CCTTCGGGCT CGACGAGATC
CGCGACGACC ATGCCCACTA CCGGCTGACG ATGGAGCCCT CCATGGCGCT CCTCGGGCTG
CGGCGCGACA ACCGGATCTT TCAGGACCGG TCGGTGCCCG AGATCCTCGA GGCCGTCCTG
AGCGAGATCC CCGGTCTCGA CTGGGATTTC AGGCTGCAGG CCAGCTATCC GCCGCGCGAC
TACTGCGTGC AGTATGGCGA GACCGATCTC GATTTCGTGC AGCGGCTGAT GGAGCATGAG
GGGATCGGCT ATTTCTTCGA GCATGGCGCG GAGGGCCACA GGCTCGTCCT CTTCGACACG
AATGCCCGGC TCGCGCCTGC ACCGGGGGCC GAGATCCTGC CCTACGAGCC CGACAGCCGG
GTGAGCTTCC GCGACGGCGA TTTCATCACC GCCTGGTTGC CCCGGGCGCA TATCCGGCCG
GGGAAGGTCT CGCAGGGCGA CTACGATTTC GAGAAGCCCT CGTCGGACCT GACGAGCCGC
GCCGAAAATC CGCTCGGCCA TGCGGCCGAC GATGCCGAGC ACTATCGCTG GCCCGGGGAT
TACCGCACCC TTCCCGCGGG CGACCGGCTG TCCCGGCTCC GGCTCGAGGA GGCGCAGGCC
CTGCAGGTGC GCATCGAGGC CCGCGGCACC GCGCGGCCGC TCTGGCCGGG CCGGATCTTC
CGGCTCGATC TCTTCCCGCG CGAGGCGGAG AACGACGACT ATCTCGTCAC CGCCTGCCGC
TACCGGCTCT GGGACGATCA GTTCCGCTCG GGTCAGTCGC GCGCCGAGGT GGGCTACGAG
GTGGATCTGT CGCTCGTCCC CGCCCGCGTC CCCTACCGGC CCGAGCGGCG CACCCCGCGC
CCGGTGATGA AGGGGCCGCA GACCGCCCTC GTGGTCGGGC CAGCGGGCGC GGAGATCTTC
ACCGACAGAT ATGCGCGGGT GAAGGTGCAT TTCTTCTGGG ACCGGCTCGA CGCCCGCAAC
GAGGCCTCCT CCTGCTTCGT CCGCGTGAGC CAGACCTGGG CCGGGGCCGG CTGGGGCTTC
ATCCAGATCC CCCGGATCGG GCAGGAGGTC ATCGTCGATT TCATCGAGGG CGACCCCGAC
CGGCCCATCG TCACGGGCCG GGTCTACAAT GCCGAGCAGA TGCCGCCCTA CGGCCTGCCG
GGCCAGGCCA CCCAGTCGGG CTGGAAGTCG CATTCCTCGC CCGGAGGCGG CGGCTGGAAC
GAGCTGCGCT TCGAGGACAA GGCCGGCGCG GAGGAGGTCT ATTTCCAGGC GCAGAAGGAC
CATACCGAGC TCATCAAGAA CGACGAAAGC CGCACCATCG GCCACGATTT CGCCGAGGAT
GTGGGCCATG ACGCCGTGCA GTCCGTGGCG CACGACCGCC GGGAGAGCGT GGGCAACGAC
AAGGACACGA GCGTGGGCCG GAACCGCACC GTCTCGATCG GCGTCGACGA CAGCGAGAGC
GTGGGCGCGA ACCGCGCGCT GCGGGTCGGC GCGGACGAGA CGATCGCGGT GGCGCGGAAT
GCGACCGAGA CCATCGGCAT GAACCACACC CAGACGGTCG GCATCGCCCA GACGGTGACG
GTCGGGGCGG CGCGCACCGA CAGCGTCGGC GGGGCCGAGA CGCGCTCGGT CGGCGCGGTC
CAGACCAACA CCATCGCCGC AAGCCGCAGC GTTTCGGTCG GTGCGGGCCA GACCCATTCG
GTGGGCGCCG ACGACGGCTG GACCGTGGGC GGGTCGCAGA CCGTCTCGGT CGGCGCGGAC
CAGTCGGTGA CGGTGGGGGC GAAACAGACG GTCAGCACCG GCTCGGATCA GGTGACCACC
GTCGGCGGCT CCCGCGCCAC GCAGGTGGCC AAGGACGACC TGCAGAAGGC CGATGGCGCC
ATGGGCATCG GCGTGGGCAA GAGCTACACG CTCGACGTCA AGGACGAGAT CACCCTGAAA
TGCGGCTCGG CCGAGATCAC GCTGAAGAAG GACGGCACCA TCGTCCTCAA GGGCAAGGAC
ATCACGCTGG ACACCTCGGG CAAGATCAAC CTCAAGGCGG GCGGCGAGAT CACCTGCAAG
GGCTCGAAGA TCAACCTGAA CTGA
|
|---|
| Protein sequence | MSEAREITLS LPAAAEDLWF SALEGEDGLG RPFHYELLLA SKSLDLAAAD ILGTPVLVTV
RGEVPRHFHG IATAFGLDEI RDDHAHYRLT MEPSMALLGL RRDNRIFQDR SVPEILEAVL
SEIPGLDWDF RLQASYPPRD YCVQYGETDL DFVQRLMEHE GIGYFFEHGA EGHRLVLFDT
NARLAPAPGA EILPYEPDSR VSFRDGDFIT AWLPRAHIRP GKVSQGDYDF EKPSSDLTSR
AENPLGHAAD DAEHYRWPGD YRTLPAGDRL SRLRLEEAQA LQVRIEARGT ARPLWPGRIF
RLDLFPREAE NDDYLVTACR YRLWDDQFRS GQSRAEVGYE VDLSLVPARV PYRPERRTPR
PVMKGPQTAL VVGPAGAEIF TDRYARVKVH FFWDRLDARN EASSCFVRVS QTWAGAGWGF
IQIPRIGQEV IVDFIEGDPD RPIVTGRVYN AEQMPPYGLP GQATQSGWKS HSSPGGGGWN
ELRFEDKAGA EEVYFQAQKD HTELIKNDES RTIGHDFAED VGHDAVQSVA HDRRESVGND
KDTSVGRNRT VSIGVDDSES VGANRALRVG ADETIAVARN ATETIGMNHT QTVGIAQTVT
VGAARTDSVG GAETRSVGAV QTNTIAASRS VSVGAGQTHS VGADDGWTVG GSQTVSVGAD
QSVTVGAKQT VSTGSDQVTT VGGSRATQVA KDDLQKADGA MGIGVGKSYT LDVKDEITLK
CGSAEITLKK DGTIVLKGKD ITLDTSGKIN LKAGGEITCK GSKINLN
|
|---|
| |