| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3021 |
|---|
| Symbol | |
|---|
| ID | 4898553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009050 |
|---|
| Strand | - |
|---|
| Start bp | 29630 |
|---|
| End bp | 30886 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640113623 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001044893 |
|---|
| Protein GI | 126463780 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0354964 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA GGAGCGACGA TCTCGCCCGC ATCCTCGACC GACGCCGCCG CGGGCGGCGC
TGGCTCTGGC CGCTGCTGGC GCTGGTGCTG CTTGCGGGCG GGGGCCTTCT CTGGGCCTCG
CGGCAGGGGG CGGAGCCCGC GCTTGCCTAT GTGACCGAGC CGGTGGAGCG GGGCGGGCTT
GTCGTGACGG TGATGGCCAC GGGCACGGTG CAGCCCACGA CGCAGGTCGA GGTTTCCTCG
GAACTGTCGG GCACGCTCGC CGCGGTGGAG GTGGATTACA ACGACGAGGT CGCGGTGGGC
CAGCCGCTCG CCCGGCTGGA CGACACGCGG CTGAAGGCGC AGGTCGCCAA TGCCGAGGCC
TCGCTCGAGG CGGCGGAGGG GCGGCTCGAA CAGGCCCGCG CCACCGCGCT CGAGGCGGCC
GAGAACTACC GCTCGCGCTC GGCGCTCGAC CAGCGGGGCG TGGCCGCCCA TCTCGATCTC
GTGGCGACCG AGGCCGCCCA CAAGCGCGCG GAATCCGAGG TGAAGATCGC CGAGGCCGAC
CGCACGCTCG CGGCTGCCAA TCTCGAGGTG CAGCGGGTGG ATCTGGCGAA AGCCGTGATC
CGCTCGCCGA TCCGCGGCAT CGTGCTCGAC CGGGCGGCGG AGGCGGGGCA GATCGTGGCC
TCCTCGCTGA ACACGCCGGT GCTGTTCACG CTGGCCGAGG ATCTGACCCG GATGGAGCTG
CGCGTCGACA TCGACGAGGC CGACATCGGC CGGGTGCGGG TGGGCAACCG CGCCTCCTTC
AAGGTGGACG CCTATCCGGG GCGGAGCTTC AAGGCCGAGA TCGTGCAGGT GCGCTACGCG
CCCGAGACGA CGGACGGGGT GGTGACCTAC AAGGCGGTGC TGTCGGTGGA CAATGGCGAG
CGGCTGCTGC GGCCCGGCAT GACCGCGACC GCGACGATCA CGGTGGCCGA GGTCGAGGGG
GCGCTCCTCG TGCCGAATGC CGCGCTGCGC TTCGCCCCGC CGGCGGTGGC CCAGCCCGGC
AGTTCCGGCG GCAACCGCGG GGGCGGGCTG CTCGGGCTCA TCATGCCCCG GGCCCCCGGG
CCGATGAGCG AGGCGGACGC CACGTCGGGC CCGACGGTCT GGGTCCTGCG CGACGGTGAG
CCCGACCGCG TCGCGGTCGA GACCGGCGAG ACCGACGGGC GGCGGACCGA GATCCGCGGC
GGCGCGCTCG AGGAGGGGGC TCCGGTCATC ACCGATCAGC GCGAGGCCGG AGCTTGA
|
|---|
| Protein sequence | MTDRSDDLAR ILDRRRRGRR WLWPLLALVL LAGGGLLWAS RQGAEPALAY VTEPVERGGL
VVTVMATGTV QPTTQVEVSS ELSGTLAAVE VDYNDEVAVG QPLARLDDTR LKAQVANAEA
SLEAAEGRLE QARATALEAA ENYRSRSALD QRGVAAHLDL VATEAAHKRA ESEVKIAEAD
RTLAAANLEV QRVDLAKAVI RSPIRGIVLD RAAEAGQIVA SSLNTPVLFT LAEDLTRMEL
RVDIDEADIG RVRVGNRASF KVDAYPGRSF KAEIVQVRYA PETTDGVVTY KAVLSVDNGE
RLLRPGMTAT ATITVAEVEG ALLVPNAALR FAPPAVAQPG SSGGNRGGGL LGLIMPRAPG
PMSEADATSG PTVWVLRDGE PDRVAVETGE TDGRRTEIRG GALEEGAPVI TDQREAGA
|
|---|
| |