Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_1381 |
Symbol | |
ID | 4897427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009049 |
Strand | + |
Start bp | 1435837 |
End bp | 1437489 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640111968 |
Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
Protein accession | YP_001043263 |
Protein GI | 126462149 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000314343 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.935869 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGGGGC AAGGGGCGGC GTCGGGGTCG GGGAAGGAGC GGCTCTGGAT CTATGACACG ACGCTGCGCG ACGGGCAGCA GACGCAGGGC GTGCAATTCT CGACGCCCGA GAAGCGGCAG ATCGCCGAGG CGCTCGACCG GCTCGGGGTG GATTACATCG AGGGCGGCTG GCCGGGGGCC AATCCGACCG ACTCGGAGTT CTTCGCGGCC CTGCCCGCCG TCCGGGCGCG GGTGGCGGCC TTCGGCATGA CGAAGCGCGC GGGCCGCTCG GCCGAGAATG ACGATGTGCT GGCCGCCGTG CTCGACGCGG GCACGGACAC GGTCTGCCTT GTCGGCAAGA CGCACGAATT CCATGTGACG ACGGCGCTCG GCGTGACGCT CGAGGAGAAT CTCGAGGCGA TCCGCGCCTC GGTGGCGCAT GTCGTGGCCA GGGGGCGCGA GGCGATCCTC GATGCCGAAC ATTTCTTCGA CGGCTACCGG GCCAATCCCG CCTATGCGCT GGGTTGCCTG CAGGCGGCGC TCGGGGCGGG GGCGCGCTGG GTGGTGCTCT GCGACACGAA CGGCGGCACG CTGCCCGCCG AGGTGGGGCG CATCGTGGCC GAGGTCATCG CCGCGGGCGT GCCCGGCGAC CGGCTGGGGA TCCACACCCA TGACGACACG GGCACCGCGG TGGCGGCCAC GCTCGCGGCC GTCGATGCCG GGGCGCGGCA GGTGCAGGGC ACGCTGAACG GCTTGGGCGA GCGCTGCGGC AACGCGAACC TCACCACGCT CATCCCCACC TTCCTGCTGA AGGAGCCCTA TGCCAGCCGC TTCGAGACCG GGATCGACCG CGAGGCCCTG AGCGGCATGG TGCGGGTGAG CCGTATGCTC GACGACATCC TGAACCGGGT GCCGCGCCGG GCCTCGGCCT ATGTCGGCGC CTCGGCCTTC GCGCACAAGG CGGGGCTCCA TGCCTCGGCG ATCCTGAAGG ATCCCGCCAC CTACGAACAT GTCGATCCCG CGCTGGTGGG CAACGTGCGG GTGATCCCCA TGTCGAACCA GGCCGGCCAG TCGAACCTGC GGGCGCGGCT GGCCGAGGCG GGGCTCGAGG TGCCTTCGGG CGATCCGCGG CTGGGCCGGA TCCTCGAGAC GGTCAAGGCG CGCGAGGATC AGGGCTATGC CTACGATTCC GCGCAGGCGA GCTTCGAGCT GGTGGCGCGG CGCGAGCTGG GCCTCCTGCC CAGCTTCTTC GAGGTGAAGC GCTACCGCGT GACCGTCGAG CGGCGGCGGG TGGGCGAGGG CACCATGACG CTCTCGGAAG CGGTGGTCGT GGTGCTGATC GACGGGCAAC GCGTGCTGTC GGTTTCGGAA AGCCTCGACG AGAACGGCAC CGAGCGCGGC CCGGTGAACG CGCTGTCGAA GGCGCTGGCC AAGGATCTCG GCCGCTGGCA GTCGGTGATC GACGACATGC GGCTGGTGGA TTTCAAGGTG CGGATCACGC AGGGCGGCAC CGAGGCCGCG ACCCGCGTCA TCATCGACAG CGAGGACGGG CAGGGCCGGC GCTGGTCGAC GGTGGGGGTT TCGCCCAACA TCGTCGATGC CTCGTTCGAG GCGCTCCTTG ATGCGATCAA CTGGAAGCTC GTGCGCGACG CACGGCAGGA GGACAGCCGA TGA
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Protein sequence | MAGQGAASGS GKERLWIYDT TLRDGQQTQG VQFSTPEKRQ IAEALDRLGV DYIEGGWPGA NPTDSEFFAA LPAVRARVAA FGMTKRAGRS AENDDVLAAV LDAGTDTVCL VGKTHEFHVT TALGVTLEEN LEAIRASVAH VVARGREAIL DAEHFFDGYR ANPAYALGCL QAALGAGARW VVLCDTNGGT LPAEVGRIVA EVIAAGVPGD RLGIHTHDDT GTAVAATLAA VDAGARQVQG TLNGLGERCG NANLTTLIPT FLLKEPYASR FETGIDREAL SGMVRVSRML DDILNRVPRR ASAYVGASAF AHKAGLHASA ILKDPATYEH VDPALVGNVR VIPMSNQAGQ SNLRARLAEA GLEVPSGDPR LGRILETVKA REDQGYAYDS AQASFELVAR RELGLLPSFF EVKRYRVTVE RRRVGEGTMT LSEAVVVVLI DGQRVLSVSE SLDENGTERG PVNALSKALA KDLGRWQSVI DDMRLVDFKV RITQGGTEAA TRVIIDSEDG QGRRWSTVGV SPNIVDASFE ALLDAINWKL VRDARQEDSR
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