| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1337 |
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| Symbol | |
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| ID | 4896726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009049 |
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| Strand | - |
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| Start bp | 1385803 |
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| End bp | 1388409 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640111924 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_001043219 |
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| Protein GI | 126462105 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.402102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCA ACCCGCGACA GGATCTCGAC CGCTACCGCG CCAAGCGCGA CTTCGCGCGC
ACGCCCGAGC CGCAGGGCCG CTCCGAGGCG CCGCGCCCCG AGGCGGAGAG CCTGTCGTTC
GTCGTGCAGA AACATGCAGC CTCCCGTCTG CACTGGGATT TCCGGCTGGA GTGGAACGGC
GTCCTTCTGA GCTGGGCCGT GACGCGCGGC CCCTCGCCCG ATCCGTCCGC CCGCAGGCTT
GCGGTGCGAA CCGAGGATCA TCCGCTGGAT TATGCCGAGT TCGAGGGAAC GATCCCCAAG
GGCGAATATG GCGGCGGCAC GGTCATGCTC TGGGACCGGG GCACCTGGGA ACCGCAGGGC
GACTTTGCGG AGGGGCTGCG GACCGGTCAG CTCAAGATCC GCCTCGCGGG CGAGCGGATG
CGCGGCCGCT GGACGCTGGT GCGCATGAAA CCCAGGCCGC GCGAGAAGGC CGAGAACTGG
CTCCTCATCA AGGAGCACGA CACGCATGAA AGCGAGCAGA CCGAGGAGCT GGTCGAGCGG
CACATGACCT CGGTCGCAAC GGGGCGGACC ATGGAGCAGA TCGCCGCCGG CAAGGCGCCA
AGACGGCGCA CGCGCAAGGC CGACCTGCCC GCCTTCCGGC CGCTCCAGCT CGCGCGTCTC
GTTCCGGCGG CGCCCGAGGG AGAGGACTGG ATCCACGAGA CCAAGTTCGA CGGCTACCGC
TGCCTCGCGG CCCTCGCGGG AGGCCGGGCC CGCCTCTACA CCCGCTCCGG CCTCGACTGG
ACGGCCAAGT TCGGCGCCCT CGTCGAGGAT ATCGAGGCGC TTGAGGCCGA GGAGGCGCTG
ATCGACGGCG AGGTGATCGC GCCGGGCCGG GAGGGCGGCT CCTTTTCGGA GCTGCAGGCA
CGGCTGAAAT CGGGGGGCCA GCTCCTCTTC ATGGCCTTCG ACCTACTGCT CCTCGACGGC
GAGGACCTGA CCGGACAGCC GCTTCTCGCG CGGAAGGAGC GGCTCGAGAC GCTGATCGGC
AAGGGGCGCG GCGCGGTGCG CTTCTCGGGC CACATCCGCG GCCACGGCCC CGAGGTGCAC
GAGCGCATCT GTGCGGCAGG CCTCGAAGGG ATCGTCTCGA AGCGGGCCTC CGCGCCCTAT
GCGGGCAGCC GGAACGGCGA CTGGCTGAAG GTGAAATGCG CGCACCGGCA GGAATTCGTG
ATCTGCGGCT GGAACGCCTC GGACAAGCCG GGCCGTCCCT TCGCCTCGCT GGTGATGGGC
AGCTACGAAA AGAGCCGTCT GGTCTACCGC GGCAGTGTCG GCAGCGGCTT CGGCGCCCCC
CTGTTCCGCG AGTTGAAGCC GCTTCTGGCC GAACGGGCGC AAAGCGCCTG CCCCTTCGAC
CGCACGCCGG CCGAGGCCAA GGGGGCGCAC TGGCTGAAGC CCGAGCTGGT GGCCGAGGTG
AGCTTCACCG AACTGACGGC GGAGGGGCAC ATCCGGCACG GGGTCTTCGC CGGCCTGCGG
CGCGACAAGG ACGCGCGCGA GGTGCGGCTC GAGGAGCCCG CGCCCGAAAC GCCCGCGACC
CGGAAGTCGG GCGTGCGGAA GAAGGGGACG AAGACGGCCC GGCCAGACGC CCCCTCACCC
GACGAGCCCG CCCCCGAGCC TGCCCGGAAA CCCCGGACGG CGCGCGGGGA GAAGAAGGAG
ACGACGATGG CCCGACCCGA CGACCTGCGC GTCGCAGGCA TCCGCATCAG CCACCCCGAC
CGGCGGATCT ACGACCGGCC TGCCATCACG AAACACGAGG TGGCGGAGCA TGCCGAGGCA
CTGGCGCCGC GGATGCTGCG CTTCCTGAAG GATCGCCCCG TCTCGCTCCT GCGCTGCCCC
GACGGGGCGG CGGCGGAGTG CTTCTTCCAG AAGCACCGCA CCCGCGGCAT GCCCGCCGCG
ATGAAGACGG TGACCGTCGA GACGAAATCG GGACCCGAGG ATTTCATCAC CCTGCCCGAT
GTCGCGGCTC TGGTCGGGGC CACGCAGATG GGGACACTCG AATTCCACAT CTGGGGCTCG
CGCAACCGCA GCCTTCAGCG ACCGGACCGG CTGGTGTTCG ATCTCGACCC CGACGAGGGT
CTCGACTTCG CCCATGTGCG GACCGCGGCG GCCGAGCTGC GCGGTCTGCT CGCGGACCTC
GGCCTGCCCT CGGTGCCGAT GCTGTCCGGC GGCAAGGGGG TGCATGTGAT CGTGCCGCTG
AAGCCCAAGG CCGAATGGGA GAGCGTGAAG CTCTTCTCGC GGGCGCTCGC CACCCATCTG
GCTCAGGAGG CGCCCGACCG CTACACGGCC ACGATGGCCA AGGCCGGGCG CAAGGGCCGG
ATCTTCATCG ACTGGCTGCG GAACGACCGC GGCTCGACGG CGATCGCTCC CTACAGCCTG
CGCGCCCGCC CGGGCGCGCC GGTGGCGACG CCGGTCGACT GGGACGAACT CGCCTCGGCC
CGGTCGGGCG GCGACTGGAC GATCCGCTCC ATCCGCGACC GGCTCGACCG GCCCTGCCCG
CTGGCCGAGG CCTCCGCCCG GCCCGCGACA CTGGGCCGGA CCGTGATCGG GCGGCTCGAG
CGACTTGTGG CAGGAGGGAA ACCATGA
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| Protein sequence | MPANPRQDLD RYRAKRDFAR TPEPQGRSEA PRPEAESLSF VVQKHAASRL HWDFRLEWNG
VLLSWAVTRG PSPDPSARRL AVRTEDHPLD YAEFEGTIPK GEYGGGTVML WDRGTWEPQG
DFAEGLRTGQ LKIRLAGERM RGRWTLVRMK PRPREKAENW LLIKEHDTHE SEQTEELVER
HMTSVATGRT MEQIAAGKAP RRRTRKADLP AFRPLQLARL VPAAPEGEDW IHETKFDGYR
CLAALAGGRA RLYTRSGLDW TAKFGALVED IEALEAEEAL IDGEVIAPGR EGGSFSELQA
RLKSGGQLLF MAFDLLLLDG EDLTGQPLLA RKERLETLIG KGRGAVRFSG HIRGHGPEVH
ERICAAGLEG IVSKRASAPY AGSRNGDWLK VKCAHRQEFV ICGWNASDKP GRPFASLVMG
SYEKSRLVYR GSVGSGFGAP LFRELKPLLA ERAQSACPFD RTPAEAKGAH WLKPELVAEV
SFTELTAEGH IRHGVFAGLR RDKDAREVRL EEPAPETPAT RKSGVRKKGT KTARPDAPSP
DEPAPEPARK PRTARGEKKE TTMARPDDLR VAGIRISHPD RRIYDRPAIT KHEVAEHAEA
LAPRMLRFLK DRPVSLLRCP DGAAAECFFQ KHRTRGMPAA MKTVTVETKS GPEDFITLPD
VAALVGATQM GTLEFHIWGS RNRSLQRPDR LVFDLDPDEG LDFAHVRTAA AELRGLLADL
GLPSVPMLSG GKGVHVIVPL KPKAEWESVK LFSRALATHL AQEAPDRYTA TMAKAGRKGR
IFIDWLRNDR GSTAIAPYSL RARPGAPVAT PVDWDELASA RSGGDWTIRS IRDRLDRPCP
LAEASARPAT LGRTVIGRLE RLVAGGKP
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