| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_0444 |
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| Symbol | secD |
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| ID | 4896141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009049 |
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| Strand | + |
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| Start bp | 460999 |
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| End bp | 462663 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640111028 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001042332 |
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| Protein GI | 126461218 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0562014 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCATT TCCCCGTTTG GAAGCGCGTT CTGATCTGGG GCATCTGTGC CCTCGCGATC
CTCTATGCCG CGCCCAACTT CTTCTACAGC CGCGTCGAAA GTCACAATGA TGCGGTCGCC
GCCATCGAGA AGGCCGGGGG GACCGCCACT CCCGAGCAGA CGGCGGCGGT GGGGCTCTGG
CCCGAATGGC TGCCTTCGAA TATCGTGAAC CTCGGCCTCG ACCTGCGCGG CGGCGCGCAT
CTTCTGGCCG AGGTCCGGGT CGAGGACGTC TATGCCGCGC GCATGGACGG GCTCTGGCCG
GAGGTGCGCG ATGCGCTCCG CGGCCTGCGC GATCAGGTGG GCTCGATCCG GCGGCAGACC
GCGCCGGCGG GCGAACTCCG GGTAGCGATC TCGCGCCCCG AGGGGATGCA GGCGGCGCTC
GAGGCCGCGC GCAGGCTGGC CCAGCCCGTG GTGTCCTTCA CGGGCATGGG GCAGAACGAC
ATCGAGATCT CGAGCCAGGG CGACGTGCTG GTGATCCGCC TGACCGACGC CGAGAAGACG
GCGATGGACA GCCGGACGGT GCAGCAGAGC CTCGAGATCA TCCGCCGCCG TGTCGACGAG
GTCGGCACGC GCGAGCCCAC CATCCAGCGC CAGGGCGAGG ACCGGATCCT GATCCAGGTG
CCGGGCATCG GCTCGGCTGC CGAGCTGAAG TCGCTCATCG GAACGACGGC GAAGCTGACC
TTCCATCCGG TGCTCGGCCG CACCGCCGAC GCGCAGAGCA GCGCGAGCGG CGATCTCGTG
CTGCCGGCGG CCAACGAGCA GGGGATCTTC TACGTCCTCG ACCGCTCGCC CGTCGTGACC
GGCGAGGAGC TCGTCGACGC CCAGCCCTCG TTCGACCAGA ACAACCGCCC GGCGGTCAGC
TTCCGCTTCA ATCCCTCGGG GGCGCGGGCC TTCGGCGACT ATACGGCGCA GAACATCGGC
AAGCCCTTCG CGATCGTCCT CGACAATGAG GTGATCTCGG CCCCGGTGAT CCAGGCGCAT
ATCGCGGGCG GCTCCGGCAT CATCACCGGC AACTTCTCGG TCGAGGAATC CACCGAGCTC
GCCGTCCTGC TGCGCGCGGG GGCGCTGCCG GCCGAGATGA CCTTCCTCGA GGAACGGACC
ATCGGCCCGG AACTCGGGCA GGATTCGATC GACGCCGGCC GGACGGCCGC CATCGTGGGC
ATGATCGCCG TCGTGGCCTT CATGATCGCG AGCTACGGCT GGTTCGGCGT GCTGGCCAAC
ATCGCGCTCG CCATCAACAT GCTGGCGATC ATCGCGCTCC TGTCGGTGGT GGGGGCGACC
CTGACGCTGC CGGGCATCGC GGGCATCGTG CTGACCATCG GCGTGGCGGT GGATGCGAAC
GTGCTCATCT ACGAGCGGAT CCGCGAGGAG CTGAGGCAGG GCAAGCAGCC GGGCCGTGCC
ATCGAACTCG GCTTCGAGAA GGCCCTGTCC GCCATCGTCG ATGCCAACGT CACCACCTTC
CTCGTGGCGC TCATCATGTT CCTCGTGGGG GCCGGGCCGG TGCGCGGCTT TGCCGTGACG
CTGACCATCG GCATCTTCAC GTCAGTCTTC ACGGCCGTCT ACGTCACCCG GATCCTGATC
GCCACCTGGT TCGCCTGGCG GCGGCCGCGC ACCATCGTCG TCTGA
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| Protein sequence | MLHFPVWKRV LIWGICALAI LYAAPNFFYS RVESHNDAVA AIEKAGGTAT PEQTAAVGLW
PEWLPSNIVN LGLDLRGGAH LLAEVRVEDV YAARMDGLWP EVRDALRGLR DQVGSIRRQT
APAGELRVAI SRPEGMQAAL EAARRLAQPV VSFTGMGQND IEISSQGDVL VIRLTDAEKT
AMDSRTVQQS LEIIRRRVDE VGTREPTIQR QGEDRILIQV PGIGSAAELK SLIGTTAKLT
FHPVLGRTAD AQSSASGDLV LPAANEQGIF YVLDRSPVVT GEELVDAQPS FDQNNRPAVS
FRFNPSGARA FGDYTAQNIG KPFAIVLDNE VISAPVIQAH IAGGSGIITG NFSVEESTEL
AVLLRAGALP AEMTFLEERT IGPELGQDSI DAGRTAAIVG MIAVVAFMIA SYGWFGVLAN
IALAINMLAI IALLSVVGAT LTLPGIAGIV LTIGVAVDAN VLIYERIREE LRQGKQPGRA
IELGFEKALS AIVDANVTTF LVALIMFLVG AGPVRGFAVT LTIGIFTSVF TAVYVTRILI
ATWFAWRRPR TIVV
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