| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_36951 |
|---|
| Symbol | LPD1 |
|---|
| ID | 4840524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009047 |
|---|
| Strand | + |
|---|
| Start bp | 389423 |
|---|
| End bp | 390856 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640391839 |
|---|
| Product | FAD flavoprotein |
|---|
| Protein accession | XP_001386090 |
|---|
| Protein GI | 126139135 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.378562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAAT TCGTCAGATA TGCCTCCACT AAGTATGATG TCGTAGTTAT TGGAGGTGGT
CCAGGAGGCT ACGTCGCTGC CATCAAAGCC GCCCAACTCG GTTACAACAC TGCTTGTATC
GAGAAGAGAG GTGCATTGGG AGGTACTTGT TTGAATGTCG GATGTATTCC CTCGAAGTCT
CTTTTGAACA ACTCCCATTT GTATCATCAA ATCAAGCACG ATTCTGAAAA CCGAGGCATT
GCCATTGATG GTGAGGTTTC TGTCAACTTT CCAAAGTTAA TGGAAGCTAA AGAGAAAGCC
GTCAAGCAAT TGACCGGCGG TATTGAGATG TTGTTCAAGA AGAATAAGGT TACCTATATC
AAGGGATCGG GAGCTTTCGT AGATGAGAAG AAGGTTAGCG TCACACCAAT TGATGGTTCG
GAAGAATTAG AACTTGAAGC CGACCACTTC ATTGTCGCTA CCGGTTCTGA GCCTACTCCA
TTCCCTGGAA TTACTATCGA CGAAGAAAGA ATCGTCACTT CTACCGGTGT CTTGGCCTTG
AAGGAAATCC CTAAGAGATT GTCCATCATC GGAGGTGGTA TCATTGGTTT GGAAATGGCT
TCTGTCTACT CTAGACTCGG TTCCGAAGTC ACTGTGATCG AGTTCCAGAA CGCTATTGGT
GCTGGTATGG ATGCTGAAGT CGCCAAGACG TCCCAGAAGT TGTTGGCCAA GCAAGGTTTG
AAGTTCAAGT TGGGCACGAA GGTCGTGTCT GGTGTCAGAG ATGGCGAAGT CGTTAAGATC
GAAGTGGAAG ACGTCAAGTC AGGCAAGAAG GAAGACTTGG AAGCCGATGT TTTGTTAGTT
GCTATTGGCA GAAGACCATA TACCGAAGGT TTAGCTCTCG AAAAGGCCGG TTTGGAACTC
GACAACAAGG GTAGATTGGT GATCGACTCT CAGTACAGAA CTAAGCACGA CCACATTAGA
GTCATTGGTG ACGTTACCTT CGGCCCAATG TTGGCCCATA AGGCTGAAGA AGAAGGCATT
GCTGCTGCCG AATACATCAA GCACGGCCAC GGCCATGTTA ACTACGGCAA CATCCCCTCC
GTCATGTACA CTCACCCGGA AGTCGCCTGG GTCGGTCTCA ACGAAGAACA ATTGAAGGAA
CAGGGCATTA AGTACAAGGT TGGTAAGTTC CCATTCATTG CCAACTCCAG AGCTAAAACC
AACTTGGATA CCGACGGCTT TGTCAAATTT CTTGCCGATG CCGAGACTCA AAGAGTATTG
GGTGTTCACA TAGTTGGTCC AAACGCCGGG GAAATGATTG CTGAAGCCGG TTTGGCCTTA
GAATATGGTG CCTCTACTGA AGACATCGCC AGAACATGCC ATGCCCACCC AACTTTGTCT
GAAGCCTTCA AGGAAGCTGC CTTGTCCACT TTCGACAAAC CTATCAACTT CTGA
|
|---|
| Protein sequence | MAQFVRYAST KYDVVVIGGG PGGYVAAIKA AQLGYNTACI EKRGALGGTC LNVGCIPSKS
LLNNSHLYHQ IKHDSENRGI AIDGEVSVNF PKLMEAKEKA VKQLTGGIEM LFKKNKVTYI
KGSGAFVDEK KVSVTPIDGS EELELEADHF IVATGSEPTP FPGITIDEER IVTSTGVLAL
KEIPKRLSII GGGIIGLEMA SVYSRLGSEV TVIEFQNAIG AGMDAEVAKT SQKLLAKQGL
KFKLGTKVVS GVRDGEVVKI EVEDVKSGKK EDLEADVLLV AIGRRPYTEG LALEKAGLEL
DNKGRLVIDS QYRTKHDHIR VIGDVTFGPM LAHKAEEEGI AAAEYIKHGH GHVNYGNIPS
VMYTHPEVAW VGLNEEQLKE QGIKYKVGKF PFIANSRAKT NLDTDGFVKF LADAETQRVL
GVHIVGPNAG EMIAEAGLAL EYGASTEDIA RTCHAHPTLS EAFKEAALST FDKPINF
|
|---|
| |