| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_1946 |
|---|
| Symbol | |
|---|
| ID | 4840563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009047 |
|---|
| Strand | + |
|---|
| Start bp | 1034396 |
|---|
| End bp | 1036966 |
|---|
| Gene Length | 2571 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640391878 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001386206 |
|---|
| Protein GI | 150866563 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.136034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TCGAGTGTGA AATCACTCAA GACGGCGTTG GAAGCTGCAC AGGATGAACT AGATCTGTTT
CTTGATAGAG ACATAGCGGA AATGGAGATT CTTCTGGTTC CGGAACATTA TCCCACCAAG
CCGCATACTG TCTCTTCACT TGCTGAGCTC TACTACTTGA CACAGACATT GCCATTGATC
AAGCTCTTAC CAGGAAGCCA CAAAGTGTTA ATGACAGACA ACTTTGAGCT GGCTCTTCTA
GAGGGAAAAA TCGCTGTATT GTACCTGAGA ATTGAAGAGT TGAAGAGGCA GGGTAAATGG
TCCCTCAGAC AGCCTCTGAA GTTCTACGAT CCATTCACAT ACAAGAAGAA GAGTAAGAAA
ATCACATTTT ACTGGGATAA CCTCCTCGCC GAGGCTAAAT GGATGGCCAC AGATTTCCAT
GAATCTGCCA AGTTCAAGAG AGCCTGCTGT GTGATGTTGG CGCAGGCTGT AAGCGATTAC
TGGACATACG GAAAGAGTGT CTGTGTCAAA CGAAAGCAAA TTGTCCATTT AACGGACGCT
GAGGTTTCTG AGCATACTCA GACTGTGGTC TCAGCTAACG AAGAAAGCGT AGATGTAGAC
ATGAATCAAG AACCAGAACA TGAAGCTGAT CATGAAACCG AAACTGTTCA GGAACAAGAA
GAACCAGTAG GAGATGATAC AAAACTGACA GTAGTCAAGG AACTGGCTAC CATAGACACC
AAATTGTTGC AGCAGGATGC TCCTATAGAC TTGTCTGTAG TAGAGAAGAT GGGTCAAATC
GATTTGGAGA TGCAACAACG ACCACAAGGA CCATTCAAGA TGTTTGTTGA TCTCAATGAT
CTTAAGAAGA TTGACCAGTC GATAATTAAG AACTTGCCGA AGTTCACGGC CTTTGACGAT
GACTCTAATG TGGCGCCGGT TTCAGCTTTG AAGCCTAGCG AGTCACCTTT GGCATCGATA
TCTCGCTTGA TCCATCCATT TGAAGACGAT AACAACTGGC ACAAGATCAT TCTTAAAGAT
ACCAATAGCT CAAGCAAGAA CGTCCGAACC GAAGGACCCC CAGAGTACCA GAAGGGGTTG
TTTGGAATCC AATCACATCG TAGATTCAAC TATTTGAAGC CTCCCAAACC TCCATTGATA
AAGAATATTG AGTATAGATC ACCGACCATA TGGCTCCCTC AAGATGACAA GTATTTGATT
CATTATGTAG CAGAGTTTTC ATTCAACTGG GAGCTTATTT CTGAACATTT GCTGACGTCG
TCTTCCGCAT CCAGCTTGAA GAAGTACGAA TCAAATATCG AACGGAGAAC TCCCTGGCAA
TGTTTTGAAA GGTATATTCA GCTCAATGAG AAGTTCCAAT TCTCAGACAT GAAGGGTGTA
TATGCCTACC ATGCTCAGCA ATGGCTAGAA CAAGCCCACA AAGCCCAACT GACGACAAAG
CGTAGAATTT CTCCATTAGG TGTTGGCGCC GAGTCTATTC AAAGGGGCCA TAGACGTTTG
CGGTGGGCTT CTATGTTTGA TGCCATGAGA AAATGCATGA AAAAGAGAGA AATCGCAGTA
GCCAAAGTGA GCCAAAGAAG AACTACCAAC GACTATTCTG CTGCTAACAC CAACAGTGCT
GGATCTGGAT CTGGTACTAC TTCTGTAGCT CTGGTCAACG GTTCTGTAGT TGGTAGTGCT
GGTTCAGCAT CTGCAGCTGG TGCTTCTGTC GTCAAGAGGC CGATGGACAG AGTTCCTAAC
CCTGCCGAGT TGTCAAAGTT GAAGTTTGAA AGAGATAAGT CGATACAAGA AGCCTATCTC
AACCAGCAAG CTACTCGTTC CAGAATGTTG GCTGCTGTAG CGCAACAGAA ACAGCAACAG
GGCCAACCGC TGCTGCTGCT GCAGCAACTG CAGCAACTGC AGCTGGCTGG GCCCACACAA
TCAGCAAACT CACCACAGCA ACTACCACTG TCATTTCCTT CACAAGAAGG TCCACCATCG
CAACAACTTG GCAATATTAG CAGTGTTCGT GTTCCGGCCT CTCTAGGGTC AGGAAGTGTG
CAATCTCGTA ATGCCAACGG CAGCGCAGGA CCTAGTAGAA TCCCTCCAAG TTCGGGTGCC
CCTATCAGCG GGCAATCTTC TCCTGTTCCA GGTAACCAAC AGCTCGGCCA GCTTCCAAAT
GGTATTAGAC GTCCAACTAC TCCAAATGGA ACTCCATATA CAAACGAACA GATCCAGCAG
CTTATCCAGC TCCAGAAACA GAGACGGTTA ATGCAACAGC AGAATCAACA AAATAAGACT
TCTATAGGAA GTTCATCTTC CAGCGGTGGA CTGTCGATTC AGAACAGTCA ATCCAAACAC
ATGGTACCCA ACAAAGTTCC TCAGGGCCCT GGTCAACAGC AGTCGATAAC CAGCAACTCC
AACCAAGCGC AGACTGTTCC ACCTCAACAA CTGGCTCCTA AGCCTAGAAT TCACTTCGCA
CCAGCACAGG TTTCTGCTAT TATTAACTCT ATACAGCAAA AGAACCCTGG TTTCAGTAAG
GAACAAGTAA CCAAACTTGC GGCGCAATAT CTTGCGAATT TACAGCAACA A
|
|---|
| Protein sequence | SSVKSLKTAL EAAQDELDSF LDRDIAEMEI LSVPEHYPTK PHTVSSLAEL YYLTQTLPLI
KLLPGSHKVL MTDNFESALL EGKIAVLYSR IEELKRQGKW SLRQPSKFYD PFTYKKKSKK
ITFYWDNLLA EAKWMATDFH ESAKFKRACC VMLAQAVSDY WTYGKRPFKM FVDLNDLKKI
DQSIIKNLPK FTAFDDDSNV APVSALKPSE SPLASISRLI HPFEDDNNWH KIILKDTNSS
SKNVRTEGPP EYQKGLFGIQ SHRRFNYLKP PKPPLIKNIE YRSPTIWLPQ DDKYLIHYVA
EFSFNWELIS EHLSTSSSAS SLKKYESNIE RRTPWQCFER YIQLNEKFQF SDMKGVYAYH
AQQWLEQAHK AQSTTKRRIS PLGVGAESIQ RGHRRLRWAS MFDAMRKCMK KREIAVAKVS
QRRTTNDYSA ANTNTGASVV KRPMDRVPNP AELSKLKFER DKSIQEAYLN QQATRSRISG
APISGQSSPV PGNQQLGQLP NGIRRPTTPN GTPYTNEQIQ QLIQLQKQRR LMQQQNQQNK
TSIGSSSSSG GLIHFAPAQV SAIINSIQQK NPGFSKEQVT KLAAQYLANL QQQ
|
|---|
| |