Gene PICST_48947 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_48947 
Symbol 
ID4840377 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp836660 
End bp838918 
Gene Length2259 bp 
Protein Length725 aa 
Translation table12 
GC content39% 
IMG OID640391692 
Productpredicted protein 
Protein accessionXP_001385524 
Protein GI150866055 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00599657 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
AGAACCAAAG ATGTCAAGCT ATTTAATGGT AGAACAATCA CTTTAATACC AAAGGTCAAT 
GTTGCTCCAG AAGAAGATAC TACATCTTCT TCGACTTCAA TCATCGATAT GAACAAACTT
TTCAGTAGAG CCGAGTTGAA ATTAAAAGTG AGAGAAAATG AACGGAAAAT ACGACTAGAG
TTAGAAGAAA GAGAAATAGC TACCATCAGA AATTCAAGTA ATGAAACGGA GCAAAGTTGC
GAACAGAATG ACGAATCTAG ATCTGCAAAT ACTACGAAAG AAATAAGTGG AATGTGGACC
GATAAGTATA GACCTCGTTC ATTTGTTCAA TTGTGTTCCG CAGGCAATGA TAGACAGTAT
CGTCTTATAT TACATTGGTT AAAAAAGTGG TCTTCTGTTG TTTATAGAGA AGATCTGACG
AGAAATGATG GTGTTGATTC GTTGGGTAGA CCTCATAGAA AAATCCTCTT AGTTCATGGT
CCTACTGGTA TTGGCAAAAC AACGGCTGTA CATCTTTTAG CCAAACAATT AGGTTACGCT
GTGCAAGAAC TCAACGCATC CAATAGTATG GACACTCTTC CACAGGCTGA TTCCAGTGAA
GGAAGATGGG GAAACGTCAA CGCTGCTTTA AAACTAAAGA TCAAGAATGC ATTGACTTCT
AATGCAATCA CATCCAATGG CAAACCATCA TGTTTGGTGA TTGATGAAAT TGATTCTGCT
ATTAACAGTG GTGATATCGT CAAAGTTCTC AACGACTTAG TTGCATCTGA TCAACGTAGT
TCAAGATCCA AAGAAAGAGA TGATAGCGAA AAGAAGAAGA AGAACAAGGC AAAGAATTTC
GTCTTGAACA GGCCAATTAT TTGCATTGCC AATGATATAT ACAACACATC TTCAACCAGG
ATGGGAGGTT CACCAATGGA GAAGTTGAGA CCATTGTGTG AGATGGTGGC ATTCAAGAAG
CCCGTGATAG CCAAAACTGG CCGTAGAGGT GGAAATTCTT TACATTCTGT TAAAGACCAT
CTTCAAATGA TCACCGAAAA GGAGAATTGG GGCTACAGTT CCCAAGACAT TACCGAAATC
GTAGAAGTTT GTGATGGGGA TATCAGAGCT TGTCTTAACC ATATGCAATT TAATGGTGCC
AAAGAAAGGG GCTTCTCTAA CAATTTCAGC ATGTCATCTG ATCTACTCTT AGACAAGCAA
GTGTCGTGGT TTACTATGGT AGATCTTTTA TTCAAGAGAG ACGCGAAGCT TAGAAAGGAA
GAAAACTTCC TTGCACTCTT GGATTCCTTC ATGAACGGTA CATGCAAGTC GGTAGTCAGC
AGTTCCAATT CGTTTGACAA AGTGGTTAAA GGATGTTTCC ACAGGTACTT AGATACTGTT
CATCTTCAAG ATGATTCTCT CCTGAAACCA TCTGAATTCA GCGATTGGTT AAGTTACTAT
GATCAATTTT CAAATAGCGG GGGTTATGGT CTCGATCTCC ATCAATATAG TGGACTCGTA
GGATTGAAAG CTTGGTCATT GTTCAGTGAA ATTAGCCCGA AGAAGCTTCA AAATCCTTTT
GTAGATAAAA AATTGGACTA TGAAACATTT GAAACAGGGA GACAAAACAG TTCCCTTATC
AAACGACTTA TTGACAAGAC GCCAATTTCT GCAAAATTAG CTCTAGGCGT AGATGAGGAA
ATATATTCAT GTTTCTTCAT TCCTTTACTA GCAAAAATAT TGTCGCCAGA TATTTCAGCC
AAAGCAAAGT CAAAAATGGT GGAGTTCGAA AAGAATACAG TCGAGAAGGT TGCAACAATA
ATAAAGGAAT TTGAAATCCG AATGGAAAAC GAGAGAGACC TTGAAACTGG CCAAGTTCTA
CTACAATACT ACCCGAACTG GGATGGGATA GTTCATTATG ACAATAAGTT TTGTCCGGTT
CCGTTCGTTT CTGCAGTGAA GCAGAACCAG TTAAAGAGAA ACTTGCTTTT CCCACTTGTA
ACAGCAGAGT TGGAGAGACT ACAAATGATT CAGAGAGCTC CAAAAAGAAT CTTGGAAGTA
GAAAAGAAGC TGGAGGTTGA CGAAAAGAGG AGAAAAGTTA AAATGGGCAA TAGTGTAGAC
TTCTTCAAAG CCAGATATGA CGGGTTGAAC TCTCAATTAG TTGACATGTC CAAACCAGAT
AATGAGTTCC ATATGGCCAG AATATGGGTC AAGTACCACG AAGGATTCTC AAGTGCTGTC
CGCAAGAATA TCGGCTGGGA AGATATTTGG ATGCCTTAG
 
Protein sequence
RTKDVKLFNG RTITLIPKVN VAPEEDTTSS STSIIDMNKL FSRAELKLKV RENERKIRLE 
SANTTKEISG MWTDKYRPRS FVQLCSAGND RQYRLILHWL KKWSSVVYRE DSTRNDGVDS
LGRPHRKILL VHGPTGIGKT TAVHLLAKQL GYAVQELNAS NSMDTLPQAD SSEGRWGNVN
AALKLKIKNA LTSNAITSNG KPSCLVIDEI DSAINSGDIV KVLNDLVASD QRSSRSKERD
DSEKKKKNKA KNFVLNRPII CIANDIYNTS STRMGGSPME KLRPLCEMVA FKKPVIAKTG
RRGGNSLHSV KDHLQMITEK ENWGYSSQDI TEIVEVCDGD IRACLNHMQF NGAKERGFSN
NFSMSSDLLL DKQVSWFTMV DLLFKRDAKL RKEENFLALL DSFMNGTCKS VVSSSNSFDK
VVKGCFHRYL DTVHLQDDSL SKPSEFSDWL SYYDQFSNSG GYGLDLHQYS GLVGLKAWSL
FSEISPKKLQ NPFVDKKLDY ETFETGRQNS SLIKRLIDKT PISAKLALGV DEEIYSCFFI
PLLAKILSPD ISAKAKSKMV EFEKNTVEKV ATIIKEFEIR MENERDLETG QVLLQYYPNW
DGIVHYDNKF CPVPFVSAVK QNQLKRNLLF PLVTAELERL QMIQRAPKRI LEVEKKSEVD
EKRRKVKMGN SVDFFKARYD GLNSQLVDMS KPDNEFHMAR IWVKYHEGFS SAVRKNIGWE
DIWMP