Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_48947 |
Symbol | |
ID | 4840377 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | + |
Start bp | 836660 |
End bp | 838918 |
Gene Length | 2259 bp |
Protein Length | 725 aa |
Translation table | 12 |
GC content | 39% |
IMG OID | 640391692 |
Product | predicted protein |
Protein accession | XP_001385524 |
Protein GI | 150866055 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00599657 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | AGAACCAAAG ATGTCAAGCT ATTTAATGGT AGAACAATCA CTTTAATACC AAAGGTCAAT GTTGCTCCAG AAGAAGATAC TACATCTTCT TCGACTTCAA TCATCGATAT GAACAAACTT TTCAGTAGAG CCGAGTTGAA ATTAAAAGTG AGAGAAAATG AACGGAAAAT ACGACTAGAG TTAGAAGAAA GAGAAATAGC TACCATCAGA AATTCAAGTA ATGAAACGGA GCAAAGTTGC GAACAGAATG ACGAATCTAG ATCTGCAAAT ACTACGAAAG AAATAAGTGG AATGTGGACC GATAAGTATA GACCTCGTTC ATTTGTTCAA TTGTGTTCCG CAGGCAATGA TAGACAGTAT CGTCTTATAT TACATTGGTT AAAAAAGTGG TCTTCTGTTG TTTATAGAGA AGATCTGACG AGAAATGATG GTGTTGATTC GTTGGGTAGA CCTCATAGAA AAATCCTCTT AGTTCATGGT CCTACTGGTA TTGGCAAAAC AACGGCTGTA CATCTTTTAG CCAAACAATT AGGTTACGCT GTGCAAGAAC TCAACGCATC CAATAGTATG GACACTCTTC CACAGGCTGA TTCCAGTGAA GGAAGATGGG GAAACGTCAA CGCTGCTTTA AAACTAAAGA TCAAGAATGC ATTGACTTCT AATGCAATCA CATCCAATGG CAAACCATCA TGTTTGGTGA TTGATGAAAT TGATTCTGCT ATTAACAGTG GTGATATCGT CAAAGTTCTC AACGACTTAG TTGCATCTGA TCAACGTAGT TCAAGATCCA AAGAAAGAGA TGATAGCGAA AAGAAGAAGA AGAACAAGGC AAAGAATTTC GTCTTGAACA GGCCAATTAT TTGCATTGCC AATGATATAT ACAACACATC TTCAACCAGG ATGGGAGGTT CACCAATGGA GAAGTTGAGA CCATTGTGTG AGATGGTGGC ATTCAAGAAG CCCGTGATAG CCAAAACTGG CCGTAGAGGT GGAAATTCTT TACATTCTGT TAAAGACCAT CTTCAAATGA TCACCGAAAA GGAGAATTGG GGCTACAGTT CCCAAGACAT TACCGAAATC GTAGAAGTTT GTGATGGGGA TATCAGAGCT TGTCTTAACC ATATGCAATT TAATGGTGCC AAAGAAAGGG GCTTCTCTAA CAATTTCAGC ATGTCATCTG ATCTACTCTT AGACAAGCAA GTGTCGTGGT TTACTATGGT AGATCTTTTA TTCAAGAGAG ACGCGAAGCT TAGAAAGGAA GAAAACTTCC TTGCACTCTT GGATTCCTTC ATGAACGGTA CATGCAAGTC GGTAGTCAGC AGTTCCAATT CGTTTGACAA AGTGGTTAAA GGATGTTTCC ACAGGTACTT AGATACTGTT CATCTTCAAG ATGATTCTCT CCTGAAACCA TCTGAATTCA GCGATTGGTT AAGTTACTAT GATCAATTTT CAAATAGCGG GGGTTATGGT CTCGATCTCC ATCAATATAG TGGACTCGTA GGATTGAAAG CTTGGTCATT GTTCAGTGAA ATTAGCCCGA AGAAGCTTCA AAATCCTTTT GTAGATAAAA AATTGGACTA TGAAACATTT GAAACAGGGA GACAAAACAG TTCCCTTATC AAACGACTTA TTGACAAGAC GCCAATTTCT GCAAAATTAG CTCTAGGCGT AGATGAGGAA ATATATTCAT GTTTCTTCAT TCCTTTACTA GCAAAAATAT TGTCGCCAGA TATTTCAGCC AAAGCAAAGT CAAAAATGGT GGAGTTCGAA AAGAATACAG TCGAGAAGGT TGCAACAATA ATAAAGGAAT TTGAAATCCG AATGGAAAAC GAGAGAGACC TTGAAACTGG CCAAGTTCTA CTACAATACT ACCCGAACTG GGATGGGATA GTTCATTATG ACAATAAGTT TTGTCCGGTT CCGTTCGTTT CTGCAGTGAA GCAGAACCAG TTAAAGAGAA ACTTGCTTTT CCCACTTGTA ACAGCAGAGT TGGAGAGACT ACAAATGATT CAGAGAGCTC CAAAAAGAAT CTTGGAAGTA GAAAAGAAGC TGGAGGTTGA CGAAAAGAGG AGAAAAGTTA AAATGGGCAA TAGTGTAGAC TTCTTCAAAG CCAGATATGA CGGGTTGAAC TCTCAATTAG TTGACATGTC CAAACCAGAT AATGAGTTCC ATATGGCCAG AATATGGGTC AAGTACCACG AAGGATTCTC AAGTGCTGTC CGCAAGAATA TCGGCTGGGA AGATATTTGG ATGCCTTAG
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Protein sequence | RTKDVKLFNG RTITLIPKVN VAPEEDTTSS STSIIDMNKL FSRAELKLKV RENERKIRLE SANTTKEISG MWTDKYRPRS FVQLCSAGND RQYRLILHWL KKWSSVVYRE DSTRNDGVDS LGRPHRKILL VHGPTGIGKT TAVHLLAKQL GYAVQELNAS NSMDTLPQAD SSEGRWGNVN AALKLKIKNA LTSNAITSNG KPSCLVIDEI DSAINSGDIV KVLNDLVASD QRSSRSKERD DSEKKKKNKA KNFVLNRPII CIANDIYNTS STRMGGSPME KLRPLCEMVA FKKPVIAKTG RRGGNSLHSV KDHLQMITEK ENWGYSSQDI TEIVEVCDGD IRACLNHMQF NGAKERGFSN NFSMSSDLLL DKQVSWFTMV DLLFKRDAKL RKEENFLALL DSFMNGTCKS VVSSSNSFDK VVKGCFHRYL DTVHLQDDSL SKPSEFSDWL SYYDQFSNSG GYGLDLHQYS GLVGLKAWSL FSEISPKKLQ NPFVDKKLDY ETFETGRQNS SLIKRLIDKT PISAKLALGV DEEIYSCFFI PLLAKILSPD ISAKAKSKMV EFEKNTVEKV ATIIKEFEIR MENERDLETG QVLLQYYPNW DGIVHYDNKF CPVPFVSAVK QNQLKRNLLF PLVTAELERL QMIQRAPKRI LEVEKKSEVD EKRRKVKMGN SVDFFKARYD GLNSQLVDMS KPDNEFHMAR IWVKYHEGFS SAVRKNIGWE DIWMP
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