Gene PICST_47700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_47700 
Symbol 
ID4839843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp1065085 
End bp1065807 
Gene Length723 bp 
Protein Length240 aa 
Translation table12 
GC content44% 
IMG OID640391158 
Productpredicted protein 
Protein accessionXP_001385559 
Protein GI150866082 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.106047 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.135513 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATAT CTGGTGAAAA GTTTGATTTT CTAGAACAGC TTCCCTTTGC CGATGGCAAA 
TTTGAAGCCA CCGGCAGAAT CACCACTCCT ATTACTTTCA CGCTTGAAAA AGACTCCACC
AAAACTGTTA CTCTTCTTCC AGTCCATGAG TATACCGAGA TTCCGGACAA TCTCGTTCAA
GTCGTCCAAG ACGAGTTCAA CTACATTGTG GAAGAGGGCC AGACGTATCC CCACCACCAG
ACGTTGACAC ATGACGATTT TGTCAAATAC TGGTTCAGTG GGTTTGTAGC TATACTCATA
GAAGGTGAAC ACCAATCGGC CCTCGACGAC GACTTGAAAC TGTTGTCGGT ATCTCAATGG
CGAGACATTT TCCTCGGGAA CTTCTACATC AAGCCAAACT ACATTGGCAG ATGTTCACAT
GTGTGCAACG CCGGTTTTGT TGTCAACCAC GAGAAACGAG GTTTGGGCCT CGGGAAGGAA
CTCGGAAGAA AGTACTTGGT ATGGGCTCCA CAATTGGGGT ATGTGTATTC GGTTTTCAAC
CTTGTTTTTG AGACAAATAT CGCCAGTTTG AAGATTTGGG ATGGATTGGG ATTCGAAAGA
ATTGGATATG TCAAGAATGT CGCTGTTCTT AAAGGTCATA AGCATTTAGT AGGTGCACAT
ATGTTCGGTA AGGACTTGGT TTCTGAAAAA GGCATTGAAG CAGCAGAAAA CGGAAAAGTA
TGA
 
Protein sequence
MSISGEKFDF LEQLPFADGK FEATGRITTP ITFTLEKDST KTVTLLPVHE YTEIPDNLVQ 
VVQDEFNYIV EEGQTYPHHQ TLTHDDFVKY WFSGFVAILI EGEHQSALDD DLKSLSVSQW
RDIFLGNFYI KPNYIGRCSH VCNAGFVVNH EKRGLGLGKE LGRKYLVWAP QLGYVYSVFN
LVFETNIASL KIWDGLGFER IGYVKNVAVL KGHKHLVGAH MFGKDLVSEK GIEAAENGKV