Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_36809 |
Symbol | MTR4 |
ID | 4840256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | - |
Start bp | 1394577 |
End bp | 1397783 |
Gene Length | 3207 bp |
Protein Length | 1068 aa |
Translation table | 12 |
GC content | 45% |
IMG OID | 640391571 |
Product | Dead-box family helicase required for mRNA export from nucleus |
Protein accession | XP_001385966 |
Protein GI | 150866387 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4581] Superfamily II RNA helicase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.787056 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGCTG ACGATCTCTT CGACGTGTTC GACGAAGCGC CTGTGACTGC TCCTCCAGTC ATTGAGACAG CTGGGGAGTC GAAAAAAGAG TCTAAGAAAA GAACAGCTGA AGACGTGAAG AATGAGAGCG AAGTGAAAAA TTCCAGTAGT CAATACAATG ATGAGAACAA CAATGAGGCC AGCAGTAATA ATAAAAAAGC TAACACGAGG TCAAAGCCAG ATATTAAACC TGTTGTCTTC GATTCTCTTG AAATTGAGGC CTCCCGTGAA GTCGCAGCGC TGGACGGGCT TATGGCTAGT GCTGAGTCTG TTTCAGACAA GAAGCCCGAA GGGTTGAAGT TGAGACATCA GGTTAGGCAC CAGGTTGCCA TTCCGCCTGA TTATCCGTAT GTGCCCATCG GTGAGCACAA GAGACAAAAA GAGGCGAGAA CTTATCCATT TATTTTAGAT CCTTTCCAGG ACACAGCCAT CTCGTGTATA GACAGAGATG AGTCTGTACT TGTTTCTGCG CACACCTCAG CTGGTAAGAC AGTTGTAGCC GAGTATGCTA TTGCACAGTC GTTGCGTGAC AAGCAGCGTG TCATTTATAC TTCGCCCATT AAGGCTTTAA GTAACCAGAA GTATAGAGAG TTATTGGCAG AATTTGGCGA CGTAGGCTTG ATGACCGGAG ATGTCACTAT CAACCCCGAT GCTGGGTGTT TGGTGATGAC GACGGAGATT TTGAGGAGTA TGTTGTACCG TGGTTCGGAA ATCATGCGAG AAGTAGCTTG GGTCATCTTT GATGAAGTCC ACTATATGAG AGACAAGTCG CGTGGTGTCG TCTGGGAAGA AACTATTATC TTGTTACCAG ACAAGGTGCA TCATGTTTTT CTTTCTGCTA CCATTCCCAA TGCCATGGAA TTCGCAGAAT GGATTGTTAA GATCCATGCG CAGCCTTGTC ACGTTGTGTA CACAGACTTC AGGCCAACTC CATTGCAGCA CTACTTGTTT CCAGCTGCTG GAGATGGGAT CCATTTGGTT GTAGACGAAA AGGGAACTTT CAGGGAAGAA AATTTCCAGA AAGCCATGGC TTCTATCAGC GATGCTGGTG GCGATGATCC TGCCTCGGGT GATAAATCTA AAGGTAAGAA GGGTCAAACG TACAAGGGAG GCAATAAGGA CGGTAAGTCG GACATCTACA AGATCGTCAA GATGATCTAC ATGAAAAGGT ACAACCCTGT GATTGTGTTT TCGTTTTCGA AAAGAGACTG TGAGTCTCTT GCATTGAAGA TGTCCAAGTT AGATTTCAAC AACGACGACG AAAGAGATGC CTTGACCAAG ATCTTCAATA ACGCCATCAA CTTGTTGCCG GAAGCAGACA AAGAGTTGCC CCAGATCAAG AACATCTTAC CCTTGTTGAA GCGAGGTATC GGTATCCACC ACTCGGGATT GTTGCCTATA TTGAAGGAGA TTATCGAGAT CTTGTTTCAG GAGGGTCTTT TGAAGGTGTT GTTTGCTACA GAGACCTTTT CAATTGGGTT GAATATGCCT GCTAAAACAG TAGTATTTAC CTCTGTTCGT AAATGGGATG GTGTAGGCTT CAGATGGGTC TCGGGAGGTG AGTATATCCA GATGTCTGGT AGAGCTGGTC GTCGTGGGTT GGATGATCGT GGTATAGTCA TCATGATGAT TGACGAAAAA ATGGAGCCTC AAGTAGCCAA AGGTATGGTA AAGGGACAGG CTGATAGACT TGACTCGGCC TTCCATTTGG GCTACAACAT GATCTTGAAT TTAATGAGAG TCGAAGGCAT TTCTCCCGAG TTCATGTTGG AAAACTCATT CTACCAGTTC CAGAACGCTG CCTCTGTCCC TGTGATGGAA AAGACGTTGC AGGACTTGAC TTTGAAGTAC AACACTATCG AAGTCGATGA TGAAGCTACA GTGAAAGAGT ACTACGATCT CAAGAAGCAG TTGGACAAAT ACCAGGAAGA CGTCAGAAAA GTAATTACTC ATCCTGGCTA CATCTTGCCT TTCTTGCAAG AAGGAAGAGT TATCAAAGTC AAAATAGGTG ATCAGGACTA CGGCTGGGGA ATGGTGACTT CTTTCTCCAA ACGTAACAAT AAGAGAAACC AGTCGTTCAC AGACTACGAA ACCTACATTG TCAATGTATT TGTGTACACG ATGTTTGTGG ATTCGCCCGT TAACTTGATC AAGCCCTTGA ATCCCATGTT ACCTGAAGGG ATTAGACCTG CTAAGGCCGG TGAGAAGTCC AGAGTGGAGT ACATTCCTAT CACTCTCGAT TCAATTGAAA AGATCAGTAG TGTGCGGTTG AGAGTACCAG AAGACTTGAA GAGTTCAGCA TCTAAGAAGA CGTTGTTGAA GACGATGAAG GATTTGCCCA AGAGATTGCC CGATGGAATT CCATTGATGG ATCCTGTGGA AAACATGAAG ATCACTGACC AGGACTTCCA GATGCTCTTG AAGAAGATCG ATGTTTTAGA CTCCAAGCTC ATCAGCAACC CCTTGTACAA CTCAGCAAGA TTGAAGGATT TGTACGAAAA CTACAGCGAA AAGGAACAAA TACAGGAAAA AATCAAAAAC TTGAAGGAGA AGGTTTTGGA AGCACAAGCA GTTATCCAAT TGGATGACTT GAGACACAGA AAGAGAGTGT TGAGAAGGTT GGACTTTGTT ACACAGAACG ATATCATCGA GTTGAAGGGT AGAGTTGCCT GTGAAATCAG TTCAGGTGAT GAGTTGCTTT TGACGGAATT GATTTTCAAC GGTACCTTCA ACGACTTGAC ATGTGAACAG TGTGCTGCAT TGCTTTCGTG TTTTGTTTTC CAAGAAAGAG CCAAGGAGAC TCCACGTTTG AAGCCAGAAT TGGCTGAGCC ATTGAAGTCT ATGCAAGACA TGGCCAGCAA GATAGCTAAG GTGACGAAGG AAAGCAAGAT TGAAATAATA GAAAAGGACT ACGTCGAGTC GTTCAGGCCA GAGTTGATGG AAGTTACATA TGCTTGGTGT AAAGGTGCAT CGTTCACTCA GATCTGTAAG ATGACCGATG TGTACGAAGG GTCGTTGATC AGAACTTTCA AGCGTTTGGA AGAATTGATC AGACAGTTGG TGCAAGCAGC CAAGACCATT GGAAATACCG ACTTGGAGGA GAAGATGGAG AAGACCATCG AGTTGGTGCA CAGGGACATT GTCTCTGCTG GATCTTTGTA TCTTTAG
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Protein sequence | MDADDLFDVF DEAPVTAPPV IETAGESKKE SKKRTAEDVK NESEVKNSSS QYNDENNNEA SSNNKKANTR SKPDIKPVVF DSLEIEASRE VAASDGLMAS AESVSDKKPE GLKLRHQVRH QVAIPPDYPY VPIGEHKRQK EARTYPFILD PFQDTAISCI DRDESVLVSA HTSAGKTVVA EYAIAQSLRD KQRVIYTSPI KALSNQKYRE LLAEFGDVGL MTGDVTINPD AGCLVMTTEI LRSMLYRGSE IMREVAWVIF DEVHYMRDKS RGVVWEETII LLPDKVHHVF LSATIPNAME FAEWIVKIHA QPCHVVYTDF RPTPLQHYLF PAAGDGIHLV VDEKGTFREE NFQKAMASIS DAGGDDPASG DKSKGKKGQT YKGGNKDGKS DIYKIVKMIY MKRYNPVIVF SFSKRDCESL ALKMSKLDFN NDDERDALTK IFNNAINLLP EADKELPQIK NILPLLKRGI GIHHSGLLPI LKEIIEILFQ EGLLKVLFAT ETFSIGLNMP AKTVVFTSVR KWDGVGFRWV SGGEYIQMSG RAGRRGLDDR GIVIMMIDEK MEPQVAKGMV KGQADRLDSA FHLGYNMILN LMRVEGISPE FMLENSFYQF QNAASVPVME KTLQDLTLKY NTIEVDDEAT VKEYYDLKKQ LDKYQEDVRK VITHPGYILP FLQEGRVIKV KIGDQDYGWG MVTSFSKRNN KRNQSFTDYE TYIVNVFVYT MFVDSPVNLI KPLNPMLPEG IRPAKAGEKS RVEYIPITLD SIEKISSVRL RVPEDLKSSA SKKTLLKTMK DLPKRLPDGI PLMDPVENMK ITDQDFQMLL KKIDVLDSKL ISNPLYNSAR LKDLYENYSE KEQIQEKIKN LKEKVLEAQA VIQLDDLRHR KRVLRRLDFV TQNDIIELKG RVACEISSGD ELLLTELIFN GTFNDLTCEQ CAALLSCFVF QERAKETPRL KPELAEPLKS MQDMASKIAK VTKESKIEII EKDYVESFRP ELMEVTYAWC KGASFTQICK MTDVYEGSLI RTFKRLEELI RQLVQAAKTI GNTDLEEKME KTIELVHRDI VSAGSLYL
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