Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_32979 |
Symbol | |
ID | 4840183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009046 |
Strand | + |
Start bp | 1128647 |
End bp | 1129840 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 12 |
GC content | 40% |
IMG OID | 640391498 |
Product | predicted protein |
Protein accession | XP_001385570 |
Protein GI | 150866090 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.116223 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00804047 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGCCAATTT TATCTCTGAG CATTGCAATT TCAACTAGGC TTGGATATTC ACTTATCCCC ACAAACTCCT TGCTAGCCAG GGCCACGCTG ATCCACATAT CGAGATCACG ACCTGTATTA CTGAAAAAAA CAGATGCAAA AATCCAAATT CGAAAGTACT ACAATTCTTC AAGCCACAGC TACAAGCAGG AATACGAGAA GCAGAAATAT GACCAATTGA TAAGAGATCA GATAATCCAA TCTTCATTGG CTGGTTCTTC ATTGGGCTCT GGAGGGCATG GAATCAAGGA CAACAGACGT CTTTCTTTGA AGACAATCTT TTTGTTAATA GCCACATCAA GCTCACTATC TATGGTGATA TACGTTGCCA TCCAGCTTTT GAAATTCCAA GATGAAGACG CAAATCAGCC TGTATCGAGA AAGAGAATCT TTCTCCCATT CTGGGTCAAC TCTAATTTGC TATACCAAAA GACGTTTTCT TTTCCAGCTG GATTGAGTTA TCTTGACAAA GAGTATAAAG CATACCTTGA GACAGAAATG GCACAATTAA ACAAGTTCAA GACGAAATCG GACTACGACA ACTACATTGA GATCTTTGAA AACGATAATA TCCGCTTCAA GGTGTTGGAG CAAGTGTCTT CGAATTTAAA AGTGAAGCAG GTCTTTGGGT TGCCACTTGT AGTAGAAAAA CCGGCAGATT CGAAGCTCCA AATTTGGTTA GAGACTAAGT ATCCTAGTGT TTCTGGATTA GAAATAACGA TTGAAAAGAC TAAAGCTACA GAGCAGTCCA AGAAATCGAC ATCCATATCA GCTTCATGGA CAGTGAAGCT GATCAATATC GTGTCTATAA TCAATGGAGC ATTAGTACTG ATGGGATTGA AACTTGATCG TCTCGATAAT TCTGAGGCAC AACTCAAGAC GAGCGAAAGA GGCAGTGGGA AAATACACGA AGTGCCGGTT GTAGACAGAA AAGACAACCT GATTGTAAAT AAAAATCGCG ACTACAATGT GATATTCTCT GGCGAACTTA TCATCAAAGA CAAAAACCAG TTTGAGCTGG GTGTGTTGAA GTATGAGGGA TTGTTTGACT TTGACCATCT CATGATCAAC CGAGGAGTGA AGATCCACAA AATGGAACTT TATATGAGGC ACAAGAGCAA TCCAAACGAA TTGGTGAAGT ACAAGATCAT GTAA
|
Protein sequence | MPILSSSIAI STRLGYSLIP TNSLLARATS IHISRSRPVL SKKTDAKIQI RKYYNSSSHS YKQEYEKQKY DQLIRDQIIQ SSLAGSSLGS GGHGIKDNRR LSLKTIFLLI ATSSSLSMVI YVAIQLLKFQ DEDANQPVSR KRIFLPFWVN SNLLYQKTFS FPAGLSYLDK EYKAYLETEM AQLNKFKTKS DYDNYIEIFE NDNIRFKVLE QVSSNLKVKQ VFGLPLVVEK PADSKLQIWL ETKYPSVSGL EITIEKTKAT EQSKKSTSIS ASWTVKSINI VSIINGALVS MGLKLDRLDN SEAQLKTSER GSGKIHEVPV VDRKDNSIVN KNRDYNVIFS GELIIKDKNQ FESGVLKYEG LFDFDHLMIN RGVKIHKMEL YMRHKSNPNE LVKYKIM
|
| |