Gene PICST_32827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_32827 
Symbol 
ID4840293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp721672 
End bp722745 
Gene Length1074 bp 
Protein Length357 aa 
Translation table12 
GC content43% 
IMG OID640391608 
Productpredicted protein 
Protein accessionXP_001385493 
Protein GI150866028 
COG category[R] General function prediction only 
COG ID[COG5273] Uncharacterized protein containing DHHC-type Zn finger 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGTCA CGTCGGATGT CCAAACCAGG AAACTACCGT TTGTCTACCG GTTCATTACT 
AATTGGCTTG TCACAGACCC AAACATCATC GACAAATATG AACTCTACGA CAAAGAAAAC
CAACCGAAGA AAAACTACCA GGCGCTGCGT CATCAAAATG TCCCATACAT ATATTTGCTC
GGTGGAAGAT GGCGTACAAT CCGAAGGAAA CCTATAAATG TCATGAGTAT CATAATATTG
ATTGTACCCA TGGTGCTCTT TCTAGTGTTT GATGCCAAAT GGACATGGAG ACACGTGAGT
CCGTCTTTGG TAATCTTATT TGTCTATTTT TGGCTATTGT CGATGTCGTT CTTTATCACG
GCAGCCGTGG CAGACCCGGG CATCGTTCCT CGAAATATTC ACCTACCTTC GAAGATTACC
CACTCGCAAA TAGCCCAGGC TCCAGAAGAA TACTTTTACA CCGTGACTTT GCCGTACCAT
TATGGAAACG ATGGAGTGAC AGTAAAATAC TGTTCAACAT GCCATATATG GCGGCCTCCA
CGAACTAGTC ATTGCTCGGT GTGTAATTGT TGTATAATCA ACCATGACCA CCATTGCGTA
TTTTTGAACA ATTGTGTGGG CTGGCGCACC TACAAGTACT TTTTGTGGTT CCTATTGACA
TCTGTAACAG CGGCTGGATT GTTGATAGTG ATCTCGTTTG TAGAGGTGTT CCATTATAGA
CTTGTAGACA ATTCTTCTGT GCATAGTTTT CACCAGTCTA TCAGGGAACA CCCCGTTAGT
CTCTTGCTAG CTATTTATGG CTGCCTCAGT GTGGTATACC CATTGCTTCT TTTGGTATTT
CACTTGTTTC TCACATCAAA TAACATCACC ACCAGAGAGT ACTTGAACTA TGTTCATAAA
CACCCGAGTC TGGACTATAT CAATGTATAC GACTCCCACT CTGTCATAAG GAACCTTTAT
ATTAATTGGT GGGGAAGGGC ACTGTCGGTA ACGCTAGTAA AGCAATCAGA CACATACCAG
CCGGGTGACA TACGATTTGA ACGGGTGCAG CCGTTGCTGT CATTCAATGC ATAG
 
Protein sequence
MEVTSDVQTR KLPFVYRFIT NWLVTDPNII DKYELYDKEN QPKKNYQASR HQNVPYIYLL 
GGRWRTIRRK PINVMSIIIL IVPMVLFLVF DAKWTWRHVS PSLVILFVYF WLLSMSFFIT
AAVADPGIVP RNIHLPSKIT HSQIAQAPEE YFYTVTLPYH YGNDGVTVKY CSTCHIWRPP
RTSHCSVCNC CIINHDHHCV FLNNCVGWRT YKYFLWFLLT SVTAAGLLIV ISFVEVFHYR
LVDNSSVHSF HQSIREHPVS LLLAIYGCLS VVYPLLLLVF HLFLTSNNIT TREYLNYVHK
HPSSDYINVY DSHSVIRNLY INWWGRASSV TLVKQSDTYQ PGDIRFERVQ PLSSFNA