| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32630 |
|---|
| Symbol | |
|---|
| ID | 4840335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009046 |
|---|
| Strand | + |
|---|
| Start bp | 274767 |
|---|
| End bp | 276587 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640391650 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001385391 |
|---|
| Protein GI | 150865962 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000222385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACATC TACTACATAA TAGAAAGTAT AAAGTCTTGA CCTTGTTGTT CCTCGCTGTG
GTGGCCGCAT GTAGTCTCAA CTTGTTCATA GCGACACGCA TAGACCAGAA GTACTTGGAA
TCGACAGCTC TCAAATTGCA CGGAGATCTG AAATTTAACC CTAGGGCCAG CACCAGAGCA
GTATTCAAAT TTGTGCTGGA TAGAATAAAA CATAACAGTC AAGTGTCCCG TGCTGGTAAT
CCCGACGGTA TATACTTTCA CTGGGATGAC TGGGTGGACT TGTCTCCAGC CGATCGGATC
TTGAACAGGT ACAGAAAGGG GTTTCCCTTA GGAGAATGCG ACGACATCAT CGAAGACTTT
GCCAAAGTTA ACGGCTACCG AATGGAATCA TATAATAGAA AAGTACTTAG AGGGATGGCC
AACTTGTACT GTTCCAAGGA AGTGCCTGAC AGAATTATCC TCACTACTGA CAACGAGATG
ATCGAAGTCC CTGTAGTTGG AAAGAGAAGA ATGGGATACG ATAGCAAGCC TATAAAGATG
AACAAACAGA TGCTCATTAG GAAAATGAAA AAAGTAGAAA AAAGTGTTGT ACATTCGAAC
TTCACCACCT ACCCTATTAA AGCATTGCAG TCGAACTTGG ATATTAGTGT GGCAGACTTT
TTGTTCGATC CAGAGGCTGA AACCTTCAAG CTACAAGAAA AAGAATCACA AACAAAGTTA
ACTTCTGAAG AACTGACGTA CTTAGAATTT CTACAGACTT CAAGCGAATT GTCGGACCAT
GCAGACAAGT TCTTTAAATA TCCATGGATC GTCACTGATG TCGTCCAAGG AAGATCGCAT
CATATAGCAT ATCCATTTTT TAAGAGATTC ATTGGAGACA GAGAAAGACA GAGTATTATA
CACCACATGA TCAGAGCCTG GTTCCTGTTT GCAGAGACGA CTGGCTATGC CAGTTGGATT
GCGCATGGCT CTTTACTTGG TTGGACATAT AATGGGGTTA ACATGCCATG GGATACAGAT
GTGGATATAC AAATGCCAAT TGTGCAAATC GACAAACTTG GAAGATACCA CAACAACTCT
ATCATTGTTG AAAACCCACG CTATGGAAAT GGAAAATACT ATCTTGTGGT TGCACCAACG
TACTTGAAAT ATGGAAATGG TAGAAATTTC ATTGATGCCA GGTTCATCGA CATCAACAGT
GGTCTTTACA TTGACATTTC TGCTGTGCAA TATACTGGTG ACGTTCCTCC AAATAATGAG
CAGAATGAAA GACGAGACTT GTCTCAGCTA TGGGTCCATT GCAAGAACTG GAACTGGAAT
TCTTTGGATG AGATCCTACC CCTTAGACAT ACCTATTTTG AAGGCGGATC GGCATACATT
CCAAAGAAAG TGACTCAGAT CATGTCACGC AAATATGGAT CTGACTCTAT GTCTGACTAT
AGTTTCCACC ACCATAACTT CCAAAAAGAC ATAGATCTAT GGGTTCCTGA TGAGATCTGT
TCGAAACCAC CTAAAATAAA GACAAGATTC AACGAGCATG GTGGTCTTTC CTACAAAGGA
GCTTGTCATA GCCCTGTGTT AAGCGATGAA TACGATATCG TAAAACCTTC GGCAGATAGA
CACAAATTAC TCAACAAAAA CCTAGACAAC CCGGCTACTT ACAGAGTGGA GGAGATGGGA
GAATTACCCT TCTTGCGAAA AGATGCCTGG GACTACTTTA ACGACCTTAA TGAAAACCTC
GTACATTGCA CTGGCTGGGC CATTAATGAA CCAGTCGTGG GAAAGATATA CGAAACCGGA
AAAGCAAACG AAAAGCAATA G
|
|---|
| Protein sequence | MLHLLHNRKY KVLTLLFLAV VAACSLNLFI ATRIDQKYLE STALKLHGDS KFNPRASTRA
VFKFVSDRIK HNSQVSRAGN PDGIYFHWDD WVDLSPADRI LNRYRKGFPL GECDDIIEDF
AKVNGYRMES YNRKVLRGMA NLYCSKEVPD RIILTTDNEM IEVPVVGKRR MGYDSKPIKM
NKQMLIRKMK KVEKSVVHSN FTTYPIKALQ SNLDISVADF LFDPEAETFK LQEKESQTKL
TSEESTYLEF LQTSSELSDH ADKFFKYPWI VTDVVQGRSH HIAYPFFKRF IGDRERQSII
HHMIRAWFSF AETTGYASWI AHGSLLGWTY NGVNMPWDTD VDIQMPIVQI DKLGRYHNNS
IIVENPRYGN GKYYLVVAPT YLKYGNGRNF IDARFIDINS GLYIDISAVQ YTGDVPPNNE
QNERRDLSQL WVHCKNWNWN SLDEILPLRH TYFEGGSAYI PKKVTQIMSR KYGSDSMSDY
SFHHHNFQKD IDLWVPDEIC SKPPKIKTRF NEHGGLSYKG ACHSPVLSDE YDIVKPSADR
HKLLNKNLDN PATYRVEEMG ELPFLRKDAW DYFNDLNENL VHCTGWAINE PVVGKIYETG
KANEKQ
|
|---|
| |