Gene PICST_12169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_12169 
Symbol 
ID4840189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009046 
Strand
Start bp581701 
End bp582861 
Gene Length1161 bp 
Protein Length387 aa 
Translation table12 
GC content44% 
IMG OID640391504 
Productpredicted protein 
Protein accessionXP_001385458 
Protein GI150866006 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.68712 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.32837 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTACT CTTCTGAAGT GAACAAACTT CTTGCAGACG GCTCGCGGGC GTACTCGAGC 
AAGAACTACG AGCTTGCCTC CGAGAAATAC GGAGAAGCAT GTGAGAAGTA CAGTGACGAA
AAAGGAGACG AAGATGCTGA TTTGCTTTTC TTATACGGCA AGTCATTGTT CCAGAATGCT
GTTCTGAAGT CAGAAGTTTT TGGAGGACAA CCAGGCGACG ATGAACAGGA GGAAGACGAT
AAAGAGGAAG AGAATGAGGA GAACAAAGAA GATGGCGATA AGTTCCAGTT CTTTGATGTG
GCCCCAGTAG CTGAAGAAGA AGGAGAAGAT GGAGCACCAC AAGATGAAGA AGAGGAAGCA
GATGAAGAAA ATGCAGGGGA GGTGGATCAA GAAGAACAGG AAGAAAGTAA TGGTAAGGAA
AAGCACGATA AAGAAAATGA GGAAGAGCAG AGTGATTTTG AACTTGCATG GGAAATGTTT
GACATCACCA GAAACCTCCT TGAGGCGAAA TTACAAGATA TTGAAGAACA AGGCAAAGAT
TTGACAGTTC CATATCTCAA GACAGATGAC GAAGAAACAG ATAATCAGTA TATTATCTTG
ACGAAGAAAT TATCTGAAAC ATATGACTTG CTAGGAGAAG TATCTTTGGA GTCAGAGAAC
TTCCCTCAAT CTGCACAGGA TTTAAAGAGC AGTTTGCAAC TTCGTCTTAA GCTCTACAAC
CCAGAGACAT CGGCTCTAAT TTCCGAGTCA CACTACAAAT TATCGCTTGC TCTTGAGTTT
TGTGTCGAAG ACCCAACTCT GCGTCAAAGT GCCGTTGAGC ATATGAAGTT GGCTATTGAC
TCTGTTAAGA AGAGAAACGA ATCCGAAACA GATGCCCTGA AAAAGAAAGA AAACGAAGAG
TTGATCCAGG ACTTGGATGC AAGATACCAG GAGTTGAAGA GAGACCCTAC AGAAGAGCTC
AAGAGCGAAC AGTTGGATAT CATCAAGGGT ATCTTGGGTG AGCCTACTGC TGACGGCGCA
GGCTCCAGTG GATCTGCTGC TGCGTTAGTC AACGATCTAA GTGGCATCGT CAAGAAAAAG
AAGGTAGCCC AGGTCAATGA CTTGAGTGCT GTGGTTAAGA AGCGAAAAGC TCCAGGAAAG
ATCTCCGGGT CCGAAAAGAA G
 
Protein sequence
MSYSSEVNKL LADGSRAYSS KNYELASEKY GEACEKYSDE KGDEDADLLF LYGKSLFQNA 
VSKSEVFGGQ PGDDEQEEDD KEEENEENKE DGDKFQFFDV APVAEEEGED GAPQDEEEEA
DEENAGEVDQ EEQEESNGKE KHDKENEEEQ SDFELAWEMF DITRNLLEAK LQDIEEQGKD
LTVPYLKTDD EETDNQYIIL TKKLSETYDL LGEVSLESEN FPQSAQDLKS SLQLRLKLYN
PETSALISES HYKLSLALEF CVEDPTSRQS AVEHMKLAID SVKKRNESET DASKKKENEE
LIQDLDARYQ ELKRDPTEEL KSEQLDIIKG ILGEPTADGA GSSGSAAALV NDLSGIVKKK
KVAQVNDLSA VVKKRKAPGK ISGSEKK