| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_16647 |
|---|
| Symbol | |
|---|
| ID | 4839670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 1274890 |
|---|
| End bp | 1276605 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640390985 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384933 |
|---|
| Protein GI | 150865630 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0247353 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CTGGCCCCTG TTCGATTATT GAGCTCATTG CTTCACAATG ACGACGACGA AGTGGAACAA
GTTGAACATT TCAAGTATAA ACAGGAGTTG GAGAGAAAAT TAACGGTCAC TTCCATTATC
GGATTGGGTT TCTCACTTAT GGGGGTACCT TTCGGACTTT CATCTACTCT CCACATTTCA
CTTACAGACG GTGGTAACGT GACTATCTTG TATGGCTGGT TGGTTGTAGC ATTCTTTTCT
ATCTGTGTTG TCCTTAGTTT GAGTGAAATT ATTTCGAAGT ACCCTACAGC TGGTGGAGTC
TACCACTTCA GTGCACTTCT CAGTAACGAG AAGTATTCTT CTATCAGTTC CTGGATTACA
GGCTGGTTCT TATTGATTGG AAACTGGACT TACGCGGTCA GCATCATGTT TGCGGGCTCT
GAGTTCATTC TTTCTATCTT TGGCTTAAAG GACGTTTACT ACAAGGAAGA CAGTTTTCTT
GTATTGGTCG TATACTCTAT CATTTTGCTT CTCTGTGGGT TTATCAACTT CAAATTCTCC
AAATACTTGG AAAAAATCAA TAAGCTCTGT ATTGTATGGA CAATTTACAC TGTGTTGGCT
ATTGATTTTC TTTTGATTTT CTTTGCAAAG CGGACCAACT CGATTAAGGA AATCTTAACC
AACTTCGATA ATACACGGTC AGGATGGCCA GACGCATTAG CCTTCATGAT AGGACTCCAG
AGCTCTTCGT TCACTTTGAC TGGATACGGA ATGTTATTCT CGATGACTGA CGAAGTAAAA
AATCCGGAAA GAAATATGCC TAAAGGTGCT CTCAGTGCAA TTCTGATGTC TACTATTACT
GGTCTTATAT TCATTTTACC TATATTAACA ATTTTACCAG AATTGAGCAT ATTATTAGAT
GAGACTCCAG AAATCATGCC AATTGACTTG ATATTCAAGT TTTCTACGGA ATCTTATATT
GTTTCTTTCT TATTGGTCAT ACTTTTAATA GGTACGGTAT TGTTCCAAGC TCTCGGTGCA
TTAACCACAG CATCTAGAAC GACTTACGCG TTTGCCCGTG ATGGCGGACT TCCTTTCAAG
AACTACTGGG TAGAGGTTGA TTCTGTAGAA GAATCGACAA TTCCTAAGAA TGCTTTGTTC
TTATCCATGA CTGTTTGTAT TGTTCTTTCA TTGTTGTCAT TATTGTCAAC CTCTGCATTT
AACGCCTTCA TGGGAGCTTC TGTGATATCG TTAGCTTTGG CCAATGGTAT ACCAATTTTG
TGTTTGATGC TCAACAAGAG AAGAAAGGTC AAAGGTGCAG CCTTTCGGTT GAGGAAATTT
GGTTGGTTGG TCAACTTCTT GTCTGTTTTC TGGGTTGTCT TTTCGTTCAT TATATTGTGT
CTCCCCCCTG TAATAAAACA TTTGACATGG CAATCGATGA ATTACGCGTC TGTTGTCCTT
GTTGGTTTTG TTTTCTTTGC ATCCCTCGGC TACAAGGTAT GGGGTGTAAC GAGTTTCGAA
GGACCCAAGA TTGATACAGA ATACTTCGAG CTTCACCGTC TTGAATCTGC GGGAAGGGCA
ATGATGGAAA ATGCCAATGC CTTTGAAATT GGTGAAGATT TGGATGACGA AGAATTCGAT
ACCGATGCTG TACCAATTGA AGAAGTTGGA AAAAAGGACA CTAAGAATGG CTACGCTCAG
CTTGCTGGGG TTGGTGACGA AGATGGTGAT GAAGAC
|
|---|
| Protein sequence | SAPVRLLSSL LHNDDDEVEQ VEHFKYKQEL ERKLTVTSII GLGFSLMGVP FGLSSTLHIS
LTDGGNVTIL YGWLVVAFFS ICVVLSLSEI ISKYPTAGGV YHFSALLSNE KYSSISSWIT
GWFLLIGNWT YAVSIMFAGS EFILSIFGLK DVYYKEDSFL VLVVYSIILL LCGFINFKFS
KYLEKINKLC IVWTIYTVLA IDFLLIFFAK RTNSIKEILT NFDNTRSGWP DALAFMIGLQ
SSSFTLTGYG MLFSMTDEVK NPERNMPKGA LSAISMSTIT GLIFILPILT ILPELSILLD
ETPEIMPIDL IFKFSTESYI VSFLLVILLI GTVLFQALGA LTTASRTTYA FARDGGLPFK
NYWVEVDSVE ESTIPKNALF LSMTVCIVLS LLSLLSTSAF NAFMGASVIS LALANGIPIL
CLMLNKRRKV KGAAFRLRKF GWLVNFLSVF WVVFSFIILC LPPVIKHLTW QSMNYASVVL
VGFVFFASLG YKVWGVTSFE GPKIDTEYFE LHQVGKKDTK NGYAQLAGVG DEDGDED
|
|---|
| |