| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_15102 |
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| Symbol | RDH54 |
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| ID | 4839521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 1384858 |
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| End bp | 1387284 |
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| Gene Length | 2427 bp |
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| Protein Length | 809 aa |
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| Translation table | 12 |
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| GC content | 38% |
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| IMG OID | 640390836 |
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| Product | helicase |
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| Protein accession | XP_001385272 |
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| Protein GI | 150865881 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00429974 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TCAAAAGAAA GATATGCTGT TCAATGGAGG AAAAGAACCA ACAAAAAGAA CAAGACTTGG
GACGGCGACG GATACATAGT GGTATACCGG GATGCCGCTT CTAACTCGTC TTTTACTATT
GCATTCAAAC AGTTGGAGGC TAAAAATGTT ATAAGGAAAC AGTTCACAAA TGTGAATGTA
GATCAGATTC TTCGAGGTTT GATCACTATT GGGCAAAACG AGCTCGAAGT CGATTACATG
ATCAATACGG ATGCTGAGTT TCGTAGATTG ACAGGAGAAG AAGAAGAAGG ATCGGAGTCT
TTGTCATCAA ACCTTTCCCA ATCTACAATA CCGTCTAAAC CATCAAAACC TATGGCATAC
AGAAAAATGA TACCGAAGAA CTATGAGGTC ACCACTTCCA ATAGACATAC CCGTGCTCCT
CTCTATAACG ATTCAAGGGC TATAGCTTTG CCTCGACCTC CTGGTGTGAA TGAGAATGAA
CTTGTAGATG TATTGATAGA CCCTCATTTA TCTGTCAAGT TGAGACCTCA TCAGGTGGAA
GGAGTCAAAT TTGTGTATGA ATGTCTTATG GGCTTCAGAG GAAATAATGG AAAAGGATGT
CTTTTGGCTG ACGAAATGGG ACTAGGCAAA ACCCTTATGA CAATTACCGT CATCTGGACC
TTATGCAGAC AGAACCCTTT TATCAAGCAG CCTAGGTCGA CTATTCATAA AGTATTGATA
TGTTGTCCAG TTTCTCTTAT CAACAACTGG AAAGATGAGT TCAAAAAGTG GTTGGGTATG
AATAAGTTAT CAATACTTAC GTTAGGTGGG AATGTCTCTT CGAACGATAG ACAAGATTTA
GTTTCATTTG GCAATCTCAA TGTTTATCAA GTCTTAATCA TGAACTACGA GAAGGTTACG
ACTTACCACC AAGAACTTTC CAAGATTAGG TTTGACCTAT TAGTTTGTGA CGAAGGTCAT
CGTTTAAAGA GCAGTAGCAA TAAAGTCATG AACCATTTGA CTCTGTTCAA TATCCCCAGA
AAGATCTTAT TAACTGGGAC ACCCATACAG AATGACTTAG TGGAGTATTA TACCATCATT
AATTTCATCA ATCCTGGCAT TTTAGGCGAT TTCAAGTCAT TTCAGAAATC TTTTATCAAT
CCAATTACTA GGTCTAGAGA TGTCACTTGC TTTGATCCAG TTGTGAAAGA GCAAGGATTG
GAGATTTCTA ACAAATTGAT AGACATAACG AAGCAGTTCA CCTTAAGAAG AACACAATCA
CTACTTCTTA ACTATTTGAC CGAAAAGACT GATGTTATAT TGTATGCTCC ACCAACAGAT
CTCCAGAAAC GATTGTTCAG TTACATAATC AATCTAAAGT CATTCAACGA GTTGATGAAT
GATTCAGCTT CCACTACGAC ACAAGCATTT ACCTTGATAA ACCTATTCAA AAAGCTATGT
AATTCGCCGT CCTTATTGCT CGAAGACAAC TTCTTTTCAA AATTGATCAA AGGAGAGAAA
GAAGAGATTG AGTTGCTTAA CAAGAATACA TTGACAACCT CGTCTGGAAA AATCAATATC
TTGATTCCAT TATTGCTAGA GATCACGTCT TTCAACGAGA AAATTGTTCT CGTATCAAAC
TACACCAAAA CTCTCGACTT ACTAGAAGCA GTGTTAAAGA AGTTGGATTT ATCCTTTTTG
AGACTCGATG GATCTACTGC TAAGAACTTA CGGAACAAGT TGGTAAACCA ATTCAACAAG
TCTAATATCA ATGTATTCCT ATTGTCTTCC AAAAGTGGAG GTATGGGTCT CAATCTTGTT
GGAGCATCCA GATTAATTCT CTTCGATAAT GATTGGAACC CTTCTGTAGA TTTGCAATCA
ATGTCTAGAA TCCATAGAGA TGGACAAACT CGTCCCTGCT TCATCTACAG AATTCTCACT
ACTGGCACCA TTGACGAAAA GATATTTCAG AGACAGCTAA TGAAGAGCAA ATTGAGTTCC
AAATTTTTGG ATAACGAATC CCAATCAACA TCCGATGTTT TTGACTATCG TGATTTGAAG
AACTTGTTTG AAATTGAAGA GAACACAATC TCTAACACTC ACGATTTACT AGAGTGTGAA
TGTACGGGCG ATGGACACAA CATTAGTGTC AGTCTTACAG ATAGTGAATC CGATTCTGAC
GCAGAAGGAT TCCTCAGTGC TCATAGGCAG AGTCTGTGGA TGTCAGCTCT GGACTTGCGA
GACAAACTTG AAAAGGATGA AAAGAAGAAA TTGTCAATCA AAGATGCTCT TAACGAATAT
AGACATTTCG ACCCAGCCAC AGATGCTGAT AAAGTCTGTC AGCATATTAA CGACAAGGTA
CTAGTTAATA TCATCAACAA CAAGGGTTAC AATAAGAAAA CATTTCCCAT CAGTTTCATC
ATGACAAGGG TTTCTGACAG AACTACT
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| Protein sequence | SKERYAVQWR KRTNKKNKTW DGDGYIVVYR DAASNSSFTI AFKQLEAKNV IRKQFTNVNV
DQILRGLITI GQNELEVDYM INTDAEFRRL TGEEEEGSES LSSNLSQSTI PSKPSKPMAY
RKMIPKNYEV TTSNRHTRAP LYNDSRAIAL PRPPGVNENE LVDVLIDPHL SVKLRPHQVE
GVKFVYECLM GFRGNNGKGC LLADEMGLGK TLMTITVIWT LCRQNPFIKQ PRSTIHKVLI
CCPVSLINNW KDEFKKWLGM NKLSILTLGG NVSSNDRQDL VSFGNLNVYQ VLIMNYEKVT
TYHQELSKIR FDLLVCDEGH RLKSSSNKVM NHLTSFNIPR KILLTGTPIQ NDLVEYYTII
NFINPGILGD FKSFQKSFIN PITRSRDVTC FDPVVKEQGL EISNKLIDIT KQFTLRRTQS
LLLNYLTEKT DVILYAPPTD LQKRLFSYII NLKSFNELMN DSASTTTQAF TLINLFKKLC
NSPSLLLEDN FFSKLIKGEK EEIELLNKNT LTTSSGKINI LIPLLLEITS FNEKIVLVSN
YTKTLDLLEA VLKKLDLSFL RLDGSTAKNL RNKLVNQFNK SNINVFLLSS KSGGMGLNLV
GASRLILFDN DWNPSVDLQS MSRIHRDGQT RPCFIYRILT TGTIDEKIFQ RQLMKSKLSS
KFLDNESQST SDVFDYRDLK NLFEIEENTI SNTHDLLECE CTGDGHNISV SLTDSESDSD
AEGFLSAHRQ SSWMSASDLR DKLEKDEKKK LSIKDALNEY RHFDPATDAD KVCQHINDKV
LVNIINNKGY NKKTFPISFI MTRVSDRTT
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