| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_77822 |
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| Symbol | |
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| ID | 4838878 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009044 |
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| Strand | + |
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| Start bp | 1507579 |
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| End bp | 1509304 |
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| Gene Length | 1726 bp |
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| Protein Length | 533 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640390193 |
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| Product | predicted protein |
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| Protein accession | XP_001384244 |
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| Protein GI | 150865144 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0352] Thiamine monophosphate synthase
[COG2145] Hydroxyethylthiazole kinase, sugar kinase family |
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| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase
[TIGR00694] hydroxyethylthiazole kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00729956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.350827 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ACTACTTGTA CAATGGCTAC TGACGGTCAA GGAAAGAGCG CAAGAGCTCC TAATGATAAT
GTGGACTACT CCTTATATTT GGTAACAGAC TCTACCATGA TTCCAGAATC ATCTACCTTC
ATCAAGCAGG TCCAGGAAGC CGTAGATAGC GGTGTTACTT TGGTTCAATT GCGTGAAAAG
TCGCTTTCGA CTCTTGAATT CGTTAAAAGA GCCGAAGAAG TTCACAGTAT AACCAAAAAG
AAGGGAATTC CTTTAATTAT CAATGATAGA ATTGATGTCG CACTCGCTAT AGATGCTGAA
GGTGTTCATG TTGGTCAGGA TGACATGCCT GCTGAATTGG CTAGAAAGTT GTTGGGCCCA
AATAAGATTT TGGGGGTCAC CTGCTCAAAT CCCGAAGAGG TCGATGTTGT AGTCAAACAG
AAAGTAGCCG ACTACGTTGG CTTGGGGACC GTGTACAAGA CTAACACCAA GAAGAATGTC
AGTGATCCCG AAGGCACGGG ACCCATCGGA ATCAGAAAAA TGCTTCGTGT TTTAGGAGAC
TACAACAAGG AAGCTGACTA CAAGATCAAG TGTGTGGCTA TCGGCGGAAT TAATCATTCC
AATGCCGATA AAGTGTTGTA CCAATGTCAA GTGACTGAGC AGAAGCTCGA TGGTGTGGCC
GTAGTTTCGT GTATAATGGC TTCAGCAGAT GCTAGGAAGG CTACTTTAGA CTTAGCAAAA
ATTATTGCTT CTGAGCCTGC CTTTTCCATT ACTACTCGTT TATCTGAATC TAACCTTGAT
AGTTTTCTGA AGCGTCATGG CATTAAGACT TTGGGCCAAG TTCAACCATT GGTTCACCAC
ATTACCAATA ATGTAGTGAA GAACTTCAGT GCCAATGTGA CCCTATCTAT TGGGGCGTCT
CCTATCATGT CTGAACTAGC TGAAGAATTC GACGAGCTTG TTGGCAATGC CAAACATATA
GCTTTGGTTT TAAATCTAGG AACACCTTCT CTGGACATGA TGTCAGTCTT TAAACAAGCA
ATTCAAGTAT ACAACAAATA TGGCAAACAT ATTATATTTG ATCCCGTCGC CTGTGGGGCT
ACCAAAGCTC GTCTAGAGTG TGCCAGAATC CTCTTGAACA CTGGCCATGT CTCTGTTATC
AAAGGAAATG TTGGTGAAAT CATGTCTGTA TGGAAGTTGA CTACTTTCTA CATTGCCAAA
TCTGTTGGAG AATCCAACAC CATGAGGGGA GTTGACTCCA TTTTCAATCT TCTGGAACAC
ATTTTGCTCG AAAGAGCTCG TCAAGTAGCC CTGGAGTTCA AGACAGTTGT TGTAGTCACC
GGTAAAAAGA ACTTCACGGT TTCTCCAACT GGTATAGTAA GATCATGTCT TGGAGGAAGT
CCATTGATGG GCAAGATAAC AGGTACTGGG TGTTCTTTAG GCAGCACTAT TGCTGCATTC
TTGGCAGCTG GAGCTGACGG TGAATTAGAA CAAGACTCGA CGTGTGTATT TGATGCTGCC
ACTATTGCAG TAGAGATGTA TAACAGTGCA GGTAAGCAAG CGGCAGTCAG TGTCAGTACT
CCAGGATCTT TCAGTACTAA ATTTCTTGAC CATCTAAGCA GGGGACAGGA TCTTATCCCA
ACTTTGTTCT CTAGACCCTA AATGCACAAT TGCATCTATG ACTCCATACA TATACTATTG
TATTGCATAT AGATAAGAAT TTCGTTAATT ATACATCGAT GTCAGA
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| Protein sequence | MATDGQGKSA RAPNDNVDYS LYLVTDSTMI PESSTFIKQV QEAVDSGVTL VQLREKSLST
LEFVKRAEEV HSITKKKGIP LIINDRIDVA LAIDAEGVHV GQDDMPAELA RKLLGPNKIL
GVTCSNPEEV DVVVKQKVAD YVGLGTVYKT NTKKNVSDPE GTGPIGIRKM LRVLGDYNKE
ADYKIKCVAI GGINHSNADK VLYQCQVTEQ KLDGVAVVSC IMASADARKA TLDLAKIIAS
EPAFSITTRL SESNLDSFSK LQPLVHHITN NVVKNFSANV TLSIGASPIM SELAEEFDEL
VGNAKHIALV LNLGTPSSDM MSVFKQAIQV YNKYGKHIIF DPVACGATKA RLECARILLN
TGHVSVIKGN VGEIMSVWKL TTFYIAKSVG ESNTMRGVDS IFNLSEHILL ERARQVASEF
KTVVVVTGKK NFTVSPTGIV RSCLGGSPLM GKITGTGCSL GSTIAAFLAA GADGELEQDS
TCVFDAATIA VEMYNSAGKQ AAVSVSTPGS FSTKFLDHLS RGQDLIPTLF SRP
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