Gene PICST_31723 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_31723 
Symbol 
ID4838689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009044 
Strand
Start bp1525329 
End bp1526021 
Gene Length693 bp 
Protein Length230 aa 
Translation table12 
GC content47% 
IMG OID640390004 
Productpredicted protein 
Protein accessionXP_001384595 
Protein GI150865396 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4126] Hydantoin racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.490385 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.555446 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTGC TAGTAATAAA CCCTAATTCT TCTGAGAAGG TAACTGAAAA TCTCTCGAAA 
ACGGTGCTGA GCCCAGAAGG TGTAGAACTC GTTTTCTATA CGGGACCTGA GTCCGCTCCG
AGAGAGATTG TTCCTTCAAC TTCTTGTGCT TCAGAACAGG CGGTCCTTCC AGACTTGGTT
TCCAAAGGGG CAATTGAGAT CTACGATGGC TTTCTCGTTT GTTGCTATTC AGAACATCCG
CTTGTTGGTT CGCTTCAGAA ACTCACCAGC AAGCCTGTGT TGGGGATTAT GCAGGCCACG
CTTCTCTATG GGCTCCTGGT GGGTTCAAAG CTGGTAATTA TCACAAGCGT CAGTGAATGG
AACGAAGTGT TGGACACAGC CGTCACCGAC TTTGTAGGTA GCTCTAGCTT TCCGAGCAGG
AAATTTGCAC CCACCCGGGC TTTGGATGTT AGTGTTCTTT CGCTCAGCGA TCCTGAAGAG
TTCAAGAAGA TTGAAAATCG GGTAGATGTC GTTTTGAACA AGGAGTATGC GGATGAAAAC
ATAAAGACGG TATTGCTCGG ATGCGCGGGT ATGGCAGGAC TTAACGAAAA GTTGAGCGCT
GCTTTTGAGG GAGTGGTGTT TGTTGATAGT GTCAAGGTGG GTGTGGAGTT ATTGGCGCTG
TTGTGTAGAT TTCGCAGTCA ATTACATCCA TAG
 
Protein sequence
MKLLVINPNS SEKVTENLSK TVSSPEGVEL VFYTGPESAP REIVPSTSCA SEQAVLPDLV 
SKGAIEIYDG FLVCCYSEHP LVGSLQKLTS KPVLGIMQAT LLYGLSVGSK SVIITSVSEW
NEVLDTAVTD FVGSSSFPSR KFAPTRALDV SVLSLSDPEE FKKIENRVDV VLNKEYADEN
IKTVLLGCAG MAGLNEKLSA AFEGVVFVDS VKVGVELLAS LCRFRSQLHP