Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_31704 |
Symbol | SUV3 |
ID | 4838653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | + |
Start bp | 1480684 |
End bp | 1482606 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 12 |
GC content | 42% |
IMG OID | 640389968 |
Product | mitochondrial RNA helicase |
Protein accession | XP_001384238 |
Protein GI | 150865139 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00121417 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCGAC TCTATGACCA ATTTCAACAA CGACTGTTTT CTGGAGCTTA CGCTGGACTC AATTCTGCTA CTCGTCAGGA AGCTGAATTG GTGCTTTCAA AATTGAAGCA ACGACTTTTC AACGAATTCG GTGTATTCAC CAAGCTTTCA CACGAAGAGC AGTTAGCCAA AGTTAATGGG TTGTCTCTAG TACAGTATAT GAACCCTCGA TTTGCCGATA TATGTCCGCT TATCTATCTG ATAGATGCAG AAAAATATCC CAAAGGGTAC ATCGAATTCA ACGGCTTGGA GACCAAGATT GACTTGTTAA CTCTCATTAT GACAAATCTT GTCTTCAAAG AGTACATGGT GTATAAGATA GAAACATCCA AAAACACCGA CCAGGACTAT ATAGACTTAT CCAACCCTGC TCAGTGGTTT CCTGAGGCCC GTAAGATGAA GAGAAAGATC GTAATGCATG TTGGTCCTAC CAACAGTGGA AAGACATACA ATTCGTTGAA GAAGTTGGCT GAGGCTAAAA CTGGCTATTA TGCTGGACCA TTGAGATTGT TGGCACGAGA GATTTACGAA AAGTTTCTTC TGACGAATGT CAGGTGTAAT TTGATTACGG GAGAAGAAAT CATCCCCTGT ATGGATAAGT TTGGGAAAGT CAGTGGGATT TCATCTGGAA CCATTGAAAT GATTCCCCTT CACAAGAAGA TGGATGTTTG TGTTATTGAT GAAATTCAGA TGATAGCAGA TCCAGGAAGA GGATCTATAT GGACCAACGC TCTTTTGGGA GTGTTAGCTA AAGAAATTCA CTTGTGTGGA GAAGAAAGTG CTGTGCCTTT AATCAAGAAG TTGGCCAAGA TGACTGGTGA CGAAGTTGAA GTCAAGCAAT ATAAGCGACT AGGCGAGTTG AAGGTGACTG ATAAGGCTAT CTCATATAAC AAGCTCGAGA AGGGTGATTG TTTGGTGGCA TTTTCCAAAC ACAAGATCTT ACAGTTAAAG TGTGAAATTG AACGTAGAAC CAATCTCAGT GTTGGTGTCG TTTATGGAGC CTTACCTCCA GAAATCAGAT CTGAGCAATC GAGAAAGTTC AACAGCGGAG AATTTGATAT CTTGGTAGCT TCTGATGCTG TTGGAATGGG ACTCAATTTG AAGATCAAGA GAATCATCTT CCAGACGGTA AGAAAGTTCG ACGGAAAGGA AATGACCAAC TTGACTGTTT CAAGCGTAAA ACAAATTGCT GGTAGAGCTG GTAGATACTC CGAGACGCAT GGAATGCAGA CAGGATATGT TTCAGCACTT ACGTCTCGAG ACTTGATGTA TATCAAACAA GCCATGAATG CCCCCATCAG AGAGTTGGAA AAGGCAGCGA TCTGGCCAAC ATTTGATATA TGGAAACAGT ACATGGCAAA GTTTTCTAAA GACGAATCAT TGTACGATTC GTTGTTGCAG TTCGAAAGAG AGACGAAGGA CAAGAGAATG GAGCATTACT ATGTTGCCAC AGTGGATGAC AAGGCGGAGC TCATGAAGCT CTTCTTACGA GAAAACCTAT ACAAAAAGGT TCCCATCGAC GACCAGTTGA TCTTAAGTTT GTGTCCTATT AACTTAAACA TGTCATCTCC CGAGGTCACT GAAATGACGT TCAAGTATAT CAAGAATGTT CATCAGAGAA CCACCAAGAC AATCTTTGAC TTCGGCTTTA TTGACCATAA GCTCCTTACG ACTTCGCCCA ATATTGCTTC TGTGCACTTT GACAAGAGTG CGGCCTTGCT TCGTCTTCTT GAAGATCACC ATAAGGTAGT GTTGATGTTC TTGTGGTTGA GCCAAAGATT TCCAACGTTG TTTGTAGATA AGGAGAGTGC TACCGAGTTG AAGACATTGA TAGAAAAGAG GATCCAGCAG GAGTTGTCCC ATTTAAGGCG GATCAGCAGG TAA
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Protein sequence | MSRLYDQFQQ RSFSGAYAGL NSATRQEAEL VLSKLKQRLF NEFGVFTKLS HEEQLAKVNG LSLVQYMNPR FADICPLIYS IDAEKYPKGY IEFNGLETKI DLLTLIMTNL VFKEYMVYKI ETSKNTDQDY IDLSNPAQWF PEARKMKRKI VMHVGPTNSG KTYNSLKKLA EAKTGYYAGP LRLLAREIYE KFLSTNVRCN LITGEEIIPC MDKFGKVSGI SSGTIEMIPL HKKMDVCVID EIQMIADPGR GSIWTNALLG VLAKEIHLCG EESAVPLIKK LAKMTGDEVE VKQYKRLGEL KVTDKAISYN KLEKGDCLVA FSKHKILQLK CEIERRTNLS VGVVYGALPP EIRSEQSRKF NSGEFDILVA SDAVGMGLNL KIKRIIFQTV RKFDGKEMTN LTVSSVKQIA GRAGRYSETH GMQTGYVSAL TSRDLMYIKQ AMNAPIRELE KAAIWPTFDI WKQYMAKFSK DESLYDSLLQ FERETKDKRM EHYYVATVDD KAELMKLFLR ENLYKKVPID DQLILSLCPI NLNMSSPEVT EMTFKYIKNV HQRTTKTIFD FGFIDHKLLT TSPNIASVHF DKSAALLRLL EDHHKVVLMF LWLSQRFPTL FVDKESATEL KTLIEKRIQQ ELSHLRRISR
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