| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31128 |
|---|
| Symbol | CAD1 |
|---|
| ID | 4838017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 1835329 |
|---|
| End bp | 1836315 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640389332 |
|---|
| Product | cinnamoyl-Coa reductase |
|---|
| Protein accession | XP_001383963 |
|---|
| Protein GI | 126134877 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATG TCTACTTAGT TACTGGTGGA TCTGGTTATC TTGCTGGTTT CGTCCTTCTC
AACTTGCTTG AACAAGGAGC AAAGATCAAG ACCACTCTTC TCTTCCCTGA AGAAGAAGCT
CAATTGAGAG AATCGTTGTA CTCCTCAAGC GACAATCTTA CTAAGGAGAT TGTCGATGCA
AATTTGAAGG TTTACCAAGC CGATGTGACT TCGGATGACC ACTGGACCGA AATCTTTCAA
GATGTCAACT ATGTTCTTCA CTTAGCTTCT CCTTTCCCTC TAGTTCCTCC CAAAGATCCA
AATGACTTGA TTATTCCAGC AAGAGAAGGT ACTTTACGTA TCATCCGCTT TGCTTCGAAA
ACGAACACTG TCAAGCACAT GGTCGCCACA TCATCTTTTG TTGCAATTGG ATTTGGTCAC
GAGAAACCAG TGTTTACCGA AGAGGACTGG ACTGACACAG AAAAAGTGGA TGCATACCCA
CTTTCCAAGA CTTTGGCTGA AAGGGCTGCT TGGGAGTATA TTAAATCCAC CCCCGTCAAA
TTTGGCTACA CTACTATTAA CCCAGTCTTG ATGATTGGAC CTTCCTTGAA GAAGCAAGTT
ACCAACTCAA CTTCATTGAA CATCATCAAG AGTATGTTCG ACGGTACAAA CAAGGATGGA
GTTAGACCTG AAACTGTTCA TCTTGTGGAC ATCAGAGATG CTGCCAAGTT GCACATTAAA
GCTTTGACCA ATAAAAAAGC ATCTGGACAA AGAATCTTGG TAGCCTCAGG CCCTACCATT
ACGTGGGTTG ATGTTGCCAA CGTCTTGAGA ACTACACTTC CAGAAAAGTA CCATATAAAT
TTACCAACCA GAGAAACCGG ACCTAGTGAA GTTCGTAAGA TCCTCAGCAT CGAAAAGGCA
AAGAGAATCT TCAACTGGAC TCCAATTCCA TTTGAAGAGT CTTTGGCCGA AGCTGCCAAA
GGTATCATTC AGGAAGGAAA GGTCTAA
|
|---|
| Protein sequence | MSDVYLVTGG SGYLAGFVLL NLLEQGAKIK TTLLFPEEEA QLRESLYSSS DNLTKEIVDA
NLKVYQADVT SDDHWTEIFQ DVNYVLHLAS PFPLVPPKDP NDLIIPAREG TLRIIRFASK
TNTVKHMVAT SSFVAIGFGH EKPVFTEEDW TDTEKVDAYP LSKTLAERAA WEYIKSTPVK
FGYTTINPVL MIGPSLKKQV TNSTSLNIIK SMFDGTNKDG VRPETVHLVD IRDAAKLHIK
ALTNKKASGQ RILVASGPTI TWVDVANVLR TTLPEKYHIN LPTRETGPSE VRKILSIEKA
KRIFNWTPIP FEESLAEAAK GIIQEGKV
|
|---|
| |