| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31039 |
|---|
| Symbol | |
|---|
| ID | 4838197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | + |
|---|
| Start bp | 1590341 |
|---|
| End bp | 1592263 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640389512 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383589 |
|---|
| Protein GI | 126134129 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000183375 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.324549 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAC TCAAGAAAGG AAGAAGAAAC CAGAAAGCCA GACTCAATCC CATTGGAACC
AACCCCAAGG CATCCAGCAA GGATGAGAAA AGAGACGAGA ATACGAGACA GTCCAAGATC
TTGCCCTTGA TCAACAAGTT GAAGTCTACA GTAGCAAATG ATAGATCTAT GGCTTTGGGT
GCTATTACTG TTTTGGCTGA AGACGATAGG ATGAGATCGT TGTTATTGAA AGAAAAGCTA
GTTAGTATTG TCATGGAACA GTGTTTGAAC GATGCCAACG ACGAGATCAT AGTAGAATCA
TTCGGCTTGT TGAGAAATTT GGGAATTGAG GAGGGCTATG ACGTGTTGAA ATACTACTGG
AGATCCAATA TTTGGACTGC TATTGAAGCT GCCATAGCTA AAATTCAAAC TTCATACAAG
TATTTGGTAG AAAATGGTGC CAATCCAGCA GGTAATAAAA ACGACAAGTC CAAAGTTCAA
TTGTTGTACG ATTTCACGGA GAATATTTTG TCGCTTATCA TCGTATTGGC CAGTGGTTCA
GATGATTTGT ACGAATCCAT TTTCGACAAG ATCGATCCAA TCTTGAAATT TGTCTCTGAC
TTGCTAACTT CAGAAATTAG CACGACTTCT GGATTCAAGA TTTCCACTAA ACTTTTCAAC
TCCTTATTAG AATTCATCTA TGAATTCTCC ACTGAGTCAG AAGATTTTAT CAGGAAGTTC
AGTTTGGACA TCAACTTCGA TTTTGCCAAA TTGTTTGCAT ACGTAGAAGC CAAAGAGTCC
CATTACAACA ACCTCACTAG AGTATATATC GAAGGTATCA AGTTCAACAA TTTCGAAGTA
TTGAGCCAAG GAGAAAACAA GTACGAGGTC GGCACCCAAT TCTTGTCCAA CATCTTCGAA
ATCATCGTAA CAACTGATTT AGAACTTCTC AAGAAAAACA TACATGCCAT TAAAAACCCA
GACAATTCTA GCAAGCCTAT TCAGAAGGAT GCCAACACTT TGGAAACGGA CTTGTCGAAG
GGTTACGACT TAGCATTACA AACAAAATTA GAATTGACCA CATTAGAAGT GGCCCTAGAC
TTGATTACTT CTTTGTTGGA GTACTTGTCT ACCAACGATA ACGATGAACC TCTCAATTTG
CCTACACCAA CAGTTGAGGT CTTATTAAAC AAGATCTATC CAAGTTTAGT CGAATTGAAC
AACTTTGAAA ACGCCAATAA AGGTATGTTA TCATTGCGTG AAAAGATCTT GGTAGCATTG
AACAATTTGA CGTGGCTCAT GTTGTCTAAC GAATCGCTTC CAGTTGCTTG GTTCGAAAAG
TCACTTGCAT TATGGGATTT GATCATAAGT TCAGCAAATA CTTCTGACGT TGTTTTACAG
AAAAACTGCC TCAACGTATT ATGGGGTATC ACTAAGTCGC TCGGGCCAGA AGTTAGAAGC
AAATTGCAGC CTTCTATCGT TGACGAATTG ATTGCAAAAT GCCAAACTAT TATGGAAAAG
CAAAATGAAG CCGACGAAAC TGATATAGAG TTGTACCTTT CTATTGTTGG TTTCCTTGGT
AACTTGGCTC CAGTCGTAGG CAACACTCAA ATCACGTCTA AAATTTCCCA GTTCTTGATT
ACTACCATCG AATTATTATG CAACTCTACA GTTACTACTG TCACCAGCCC GGCCAAGATA
GAAGTTGTAT TGGAGGCCAT AAACGTCATT TACGAGATTT TCGGTGATAT CGAATTTGAC
TACGACTACG AGATCTTTGT GCAACAAGGC TACTTGCAAA AATTGTCCCT TTTGGAACCA
AAGGTCAAGG AATTGTACAA GAAGATCGAT AAAAATAAGT ATCCACATCT CAAAGCTAAA
GGTGAAGAGA CGTGGATTAA TTTGGGCAGA TTTATCCAGT ATAAACAGAG TGAAAGAGCG
TAG
|
|---|
| Protein sequence | MGKLKKGRRN QKARLNPIGT NPKASSKDEK RDENTRQSKI LPLINKLKST VANDRSMALG
AITVLAEDDR MRSLLLKEKL VSIVMEQCLN DANDEIIVES FGLLRNLGIE EGYDVLKYYW
RSNIWTAIEA AIAKIQTSYK YLVENGANPA GNKNDKSKVQ LLYDFTENIL SLIIVLASGS
DDLYESIFDK IDPILKFVSD LLTSEISTTS GFKISTKLFN SLLEFIYEFS TESEDFIRKF
SLDINFDFAK LFAYVEAKES HYNNLTRVYI EGIKFNNFEV LSQGENKYEV GTQFLSNIFE
IIVTTDLELL KKNIHAIKNP DNSSKPIQKD ANTLETDLSK GYDLALQTKL ELTTLEVALD
LITSLLEYLS TNDNDEPLNL PTPTVEVLLN KIYPSLVELN NFENANKGML SLREKILVAL
NNLTWLMLSN ESLPVAWFEK SLALWDLIIS SANTSDVVLQ KNCLNVLWGI TKSLGPEVRS
KLQPSIVDEL IAKCQTIMEK QNEADETDIE LYLSIVGFLG NLAPVVGNTQ ITSKISQFLI
TTIELLCNST VTTVTSPAKI EVVLEAINVI YEIFGDIEFD YDYEIFVQQG YLQKLSLLEP
KVKELYKKID KNKYPHLKAK GEETWINLGR FIQYKQSERA
|
|---|
| |