Gene PICST_17338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_17338 
Symbol 
ID4838089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1617197 
End bp1618621 
Gene Length1425 bp 
Protein Length475 aa 
Translation table12 
GC content45% 
IMG OID640389404 
Productpredicted protein 
Protein accessionXP_001383932 
Protein GI126134815 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTAG AAACGCACCT ATACGACGTT CTAGGCGTGC CTACGATAGC CACCACGGAG 
GAGATATCAA GAGCATACAA ACGGCTAGCT CTTAAGTGCC ATCCCGATAA AACCAACCAC
AATCCACAGC TAACTGAACA ATTCAAAGAG TCTACGAGAG CTTACGAGAT TCTCAGAGAT
GCCAAAAAGA GAGGAATATA CGACCAGTAC GGCGAGGCAG GGTTAGATGG CACGTACCAA
CCTCCAGCGA CTGCTACAAA TGTAGCTACG GGTAGTGGCA GATCTTCCTT TTTCAGCCAG
AGACCATGCC AAAGATTCGC TTCGGCGACA GATATTTTTT CTCAGGTATT CAACGACATC
AACAGCATCT TCTCGGGTGA GACCGTGTTT GAGTTTGCGC CTGGGTTCAT GAATGTTGGT
GGAGCACAGG CTCCAGGTGC GGCACATAGT GCTAACATGA TGAAGAATGT TCAGCCAGCT
GGTTCTGCAG CCAGGGCTCC GGTTCAAGGT GAGAACATCC ACCACACTTG TAATGTGACG
CTTGGGGACT TATATTTCGG TAAGACGATC AAACTTCAGC TTCCTAAGAA CAGCAAGTGC
CGTAGCTGTG ATGGGTATGG TGGATTAAGG CCGAAGACCT GTAGAACATG TCGAGGTTCG
GGCCAAGTAG TAGTCACATA CTACAACGAG TTTTCCCAAT ACCAACAGAC TGGGTCCTGT
AGAAACTGTA GCGGCACCGG GACCTATATA GCTCCATTTG ACAAGTGTAA CGACTGCACT
CTAGGATACT TAAGAGAGAA AAAGATTCTT GAGATCAGCG TTTTGCCAGG AACTAAAAAC
GGCGACAAAA TCGTTCTACG CGGCGAAGGT GACGAAGGCA GAAACTTGAT TCCAGGTGAC
GTTATAATCC ATATTAATCA GACATCACAT CCTTTCTTGG TGCGAAAGTA TAATGATTTG
TATATGGAAC ACGAGATAGA CTTGAGAACG GCGTTGTTGG GTGGAGAAGT TCTTATTCCG
GACTTCTTAA GAACCAACCA TACCCTCAAG ATTTTGATCA ACGTCCATGG CTTCAGAGAT
TTGAACCAAT CTATAGACGA AGACCTTCAG TTGGGTGAAG TCGTGGGAAC GGTGAATCCA
GACGAACCCA AAATAGTCAA GGGGTTGGGA ATGCCCATTA ACAACTTGCT CAGTTGCGGA
CAATTAGTTC AAAACAGCAA TTTGCCAGCG GAAGCATCTG ATTTCAGAAA GTATAAAAAA
GGCAATTTAT TCATTAACTT CAAAGTCAAG TTACCATCTG TTCAAGATTT TCTTAATGGA
GAACAGGATT TGACTCTTCT CAGTAAGGTA TTACCCTCCA CCAAGCCAAC GGCCAACATA
GCTAGCACTA TTTTTGAAGA GACACATTTG GCCAATATTC CGGGT
 
Protein sequence
MSLETHLYDV LGVPTIATTE EISRAYKRLA LKCHPDKTNH NPQLTEQFKE STRAYEILRD 
AKKRGIYDQY GEAGLDGTYQ PPATATNVAT GSGRSSFFSQ RPCQRFASAT DIFSQVFNDI
NSIFSGETVF EFAPGFMNVG GAQAPGAAHS ANMMKNVQPA GSAARAPVQG ENIHHTCNVT
LGDLYFGKTI KLQLPKNSKC RSCDGYGGLR PKTCRTCRGS GQVVVTYYNE FSQYQQTGSC
RNCSGTGTYI APFDKCNDCT LGYLREKKIL EISVLPGTKN GDKIVLRGEG DEGRNLIPGD
VIIHINQTSH PFLVRKYNDL YMEHEIDLRT ALLGGEVLIP DFLRTNHTLK ILINVHGFRD
LNQSIDEDLQ LGEVVGTVNP DEPKIVKGLG MPINNLLSCG QLVQNSNLPA EASDFRKYKK
GNLFINFKVK LPSVQDFLNG EQDLTLLSKV LPSTKPTANI ASTIFEETHL ANIPG