| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_82373 |
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| Symbol | SSD1 |
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| ID | 4837316 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 867439 |
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| End bp | 871959 |
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| Gene Length | 4521 bp |
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| Protein Length | 1251 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640388631 |
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| Product | Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 |
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| Protein accession | XP_001382403 |
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| Protein GI | 150863805 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0228634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CATCCAGCAA TCGAGCTCAC GTACGCAAGC GTCCCTTTAG CTTCATACAA CCCCGGGCGT
GCCTGATTGA TCATCAGCCT GCTGCCTTTC CTTTATTTGT CAATTAGTTT TGATTGATAC
TTAACGATTG ATTCTGGATT TGATCTTGAA CTCGAAATTG AGATTCGTCA AAGAAATCGA
ATTAAACTCA GAATTCAACG AATTAGATCG ATTTCCATAT TCATTCACGT TTTAATCTTT
CACCGGAATC CAATTCATAT TGATACACCA ATTGATTCGA TATTACGCGT CACATCGTTG
TCGTCGACCC GTATTCATCA TTGATCTACT ATTTGCTAAG ACACCAACGT AATTATTAAA
AATATAAATC ATTCACAATA TAGTCAACGT CAACAACAAT CAGCATCAAC TTCATCAGCT
CCAACGTCAT CAAGACTGAC AACATAATCA ACGCCATCTA ACAATCGAAA CAACATCGTA
ATTTCATCAC TTTTCATTAA TTAAATCACA ATGAGCTCAG ACAATCTCAA CATTCCTGGT
TCTGGAACTA AGAAACCCAA GAACCTCCAC ATCGCCCACC GGCGGCTGCC TTCGGAATTG
ACAACGTTGA TGGTGGAACA GTACAATCTC CAGCGACAAT TGGAACAAGT CCAGGCACAA
CAGAAGCAGA TTCTCCAGCA GCAACAATTG GCTCAACAGC AATACGCTTA TCCACCACCA
CAACAGCAGA TTCAACAGCA ATCCCAACAG TCACAATCTT CAGAACTCAT GCCACCTCCT
GGTTATCGTT CTCACCTGAG ATCATCGTCC ACTAATGGTC CGGGTAACCA GCAAGCACAC
AGAAGAACTG GCTCTTCGTC CAACAACGCA GCGCAGGGCC ACAACAGAAG ACATTCGCTT
GGTTTGAACG AAGCCATCAA AGCAGCTGCA AACCAGAGGC AGACCAACAG AACTTCTTTG
AGCCCATCGA CAACTACACC TTCGTCTTCT GGTGCTGGAT CTGATGCTAC TGTAGTATCT
GGAGGTGGAA ACGATGACAT TGTTTCTTTC AAATTTCCAC CACCTCCGTC CAGCGATGAT
TCTGAATCGC CTTCGTCGTC TCATTCTCGT TCCAGGTCTC TAGCTTATGG CCAACAATCG
TTTAAGTTCC CTGCATCTAA CTCTTCGGAC AACTTGTTGC CTCCCACTCC TAACTTCTCG
ATCGGCCAGA GTCCCGAACG AGGCCATCAG AGACGAGGAT CTCACTACAG AAGTGGATCC
CGCAACTTTG ATGCCAATGG TATCAACTCA AACTGGAGAG CTCAGCAAGG AGCCAGTTCA
GCTGGCAACA GTAGTAACAG TAGTAACAGC AGCAGTAGCA ACAATGGTAA TTATCACCAG
AGACAAGCTT CTCTGCTAGA ACCACCTCAG GCGTCATTTG TTCCTGGTCA CAAGCCTCGT
AACAGCTCGT ATGGAGGTTC TGTTTCTTCT TTGTCGCACT TCTTGCCTGG ATCTGGTGGT
GGAAATCACG GAAACACTGC TAACAATGGC CGCAAGTCTC TTTTCGCTCC TTATTTACCC
CAGTCGTCTT TGCCAGAGTT GATTAGCGAT GGTCGTTTGG TTACAGGTAC GTTAAGAGTT
AACAAAAAGA ACAGATCAGA CGCCTATGTC TCAACGGATG GTTTATTGGA TGCTGATATC
TTTATTTGTG GCTCAAAAGA TCGTAACAGA GCCTTGGAAG GCGACTTAGT AGCTGTAGAG
TTGCTAGTGG TCGACGAGGT TTGGGATTCC AAGAAAGAGA AAGAAGAGAA AAAGAGAAGA
AAAGACAACA CGTTGAATTC CAGACCATTG AATGACGATA TCCACAATGA TGCTACTTCT
GCACCTTCGA ACGAGAGTGG AAGTACCCCA GGTACATCCT TAGAAGATGA AAACGACAGC
AATGAGGGGT CTGGTTTGGC TAGAAGAGGC TCGTTGAAAC AAAGACCCAC CATGAAGAAG
AATGACGACG TAGAGGTAGA GGGCCAGTCG TTATTATTGG TGGAAGAAGA AGAGATCAAT
GACGATGTCA AGCCGTTGTA TGCTGGCCAT GTAGTTGCAG TTGTAGACCG TATTCCTGGG
CAATTATTTG CTGGTACATT GGGCTTATTG CGACCAGCGC AAGCCGCCCA GGCTGCATTG
GATAAGAAAA GCGGTAAAGA ATCTTCGGTA CAGACCCCCA AGTCTCCCAA GATTGTTTGG
TTCAAGCCTA CGGACAAGAA AGTGCCCTTG ATCGCCATTC CTACGGAACA AGCACCCAGA
GATTTTGTAG AGAATCACGA AAAGTATGCC AACAGGTTGT TTGTGGCCTC AATTAAGAGA
TGGCCTATTA CATCGTTGCA TCCTTTCGGT ACTTTAGTTA GTAGGTTGGG CAAGATTGAA
GACCCCAACA CTGAGATTGA TTCCATCTTG AGGGATAATA ACTTTTTATG TGACGAGTAT
CCCGATGATT ATTCAGATCC TTCGTCCAAC GTCTATGACT TACCCAGCAC CGAAGCTGAA
TTGTCCAATC CCGATAGAAT CGAGTACTTA AACGATTACA TTATTGCATT TACTCAGAAT
GGTACGTTTG TGGACCATGC TTTGCATGTC AAACGACTTT CTAATACCAG AATTGAGTTA
GGTTTCCATG TGGTTGATGT ATCTTACTAC ATCAAGCCCG GTTCGACTTT GGACCGGAAA
TCCAAGAAAA GATCGTCTTC TGTGTTTTTG CCTCAGAAGA TCGCACACTT GTTCCCTGAG
CAGGTAAACG AAGTGCTCTC CTTCAAAGAA AATGAGCGTA ATTTGGCTCT TTCTGTAGTT
TTTGAGATCG ACACTGCCAA CTTTGAAGTT GAGGACTTGT ACATTCATGA GTCTATCGTT
GTTCCCAAGC AGTTGGTGAG CTACGATGCC TTCGACTCGA TTTTAGAAGG TACCCCAATC
GACAGTATCT CTTCGGCTAC CTGCGATTAT ATAAAGACTT TCAGTTTGAT AGCTAAAGAG
TTCCGTCGGC AGAGGTTGGA TAACCGTGAG TTAGGCATAA CTCCAAACTT GACATTGTTG
GACCAATTGG ATGATGAGAA GGTACGTTTG AACTTGAATA TTTTCAAGGA CAGTTTAGCC
TACGACATCA TCTTTGAAAT TTCACACAAG GTCAATAATG CTATAGCTGC CAAGGTGCAT
GCTGGTTTGG GTGAACAGGC GCTTTTGCGT CGTCATCCTT TGCCTACGTT GCAGAAGATG
GAGACGTTTG TGAGAAAGGC CACAAATTTG GGCTTCAAGA TTGACACCAC CACTTCGTCG
ACCTTGCAAA AGTCGATCTT GCTGATTGAA GACCCCGTCA AACGCAAGTG CATAGAGACG
TTGTTGTACA AGTGTATGTC CAGAGGTAAA TACTATGTTG CTGGAAAGCA GGATCCCGAT
TCCTATGGTC ATTACTACTA CAATCTTCCT CTTTACACTC ACTTCACGGC TCCTTTGAGA
AGATATGCTG ACTTGATAGT CCATAGACAA TTAAAGGCCG TGTTGAATAA GGTTGAAGAG
GAAAAGGATT TGGATTCTTT GAAGGCTACT GCTGATTACT GTAACTTCAA GAAGGACTGT
GCTGCCAACG CACAAGCCCA GGCAATCCAT TTGTTGTTAT CACAGACAAT TAACGAAGTC
AGCGAGAATG CTGGTCAGTT ATTGTGTATG GGAACAGTAC TCCAGGTTTA TGAATCATCT
TTTGATGTGT TTATACCTGA GTTGGGAGTT GAAAAGAGAG TCCACGGCGA TCAACTTCCT
TTGGTGAAGG CCGAGTTTGA CAAGGCTACA CGCACTTTGG AGTTGACCTG GGAGAAAGGC
GTAGATTCTG CCACATACAT TCCTGCGGAT GAGCAATCGT CGTTGTCGTA CAGAAACTCA
ATCAAGAACA AGTACAGAAC TTCAGCATTA CAAGCAGCCA AGTTACAGAA TAAGACTCTT
TTGGAAAAGA ACAATGTGAC AACTGACTCC ATCATCGAGA AGTTGGCCAG ATTGAACTTG
GAACCTCCCT CTTTGTCTAT TCCAGCATTG AAGAGTAGTA GTGGAACCAG CGAAAACGAA
CCAACACAAG GTAAGGAATC TACAAGATCG ATGCCTTCTT CGCCTACACA GTCTGAGTTC
CCCAAGAACA CCAGGACAAA CTCATCTTCT CTCCTCCAGA ACGATGCTTC GGCCGACTCC
TTCAACGGAT TGGCTCCATA CTTACAAGAC ACCATCACGA GACCGGGCAA TGTTCAAGTC
ATTAAGGAGT TGAACCAGGT CCCAGTGTTG ATCCGGGCCG AGATCGGCAT GGCACTCCCA
TGTTTGACGG TTCGTGTCTT GAATCCATTT GCAGAGGAAC AATAGTACTC CCATTGACTT
TGTAATATTT TTCTACTTAC ACGACTTGAT GAGTTTCTTT CAAAGTGCTT TCAATTTATT
TATTGTTTCC ACTTATTCGT TTTCAGCATC TCTAACAATA ATCAAACTTT AATAAATAAT
GCGGTATTAT GATAAAGTAG T
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| Protein sequence | MSSDNLNIPG SGTKKPKNLH IAHRRSPSEL TTLMVEQYNL QRQLEQVQAQ QKQILQQQQL
AQQQYAYPPP QQQIQQQSQQ SQSSELMPPP GYRSHSRSSS TNAHRRTGSS SNNAAQGHNR
RHSLGLNEAI KAAANQRQTN RTSLSPSTTT PSSSGGNDDI VSFKFPPPPS SDDSESPSSS
HSRSRSLAYG QQSFKFPASN SSDNLLPPTP NFSIGQSPER GHQRRGSHYR SGSRNFDANG
INSNWRAQQG ASSAGNSSNT SSLEPPQASF VPGHKPRNSS YGGSVSSLSH FLPGSGGGNH
GNTANNGRKS LFAPYLPQSS LPELISDGRL VTGTLRVNKK NRSDAYVSTD GLLDADIFIC
GSKDRNRALE GDLVAVELLV VDEVWDSKKE KEEKKRRKDN TLNSRPLNDD IHNDATSAPS
NESGSTPGTS LEDENDSNEG SGLARRGSLK QRPTMKKNDD VEVEGQSLLL VEEEEINDDV
KPLYAGHVVA VVDRIPGQLF AGTLGLLRPA QAAQAALDKK SGKESSVQTP KSPKIVWFKP
TDKKVPLIAI PTEQAPRDFV ENHEKYANRL FVASIKRWPI TSLHPFGTLV SRLGKIEDPN
TEIDSILRDN NFLCDEYPDD YSDPSSNVYD LPSTEAELSN PDRIEYLNDY IIAFTQNGTF
VDHALHVKRL SNTRIELGFH VVDVSYYIKP GSTLDRKSKK RSSSVFLPQK IAHLFPEQVN
EVLSFKENER NLALSVVFEI DTANFEVEDL YIHESIVVPK QLVSYDAFDS ILEGTPIDSI
SSATCDYIKT FSLIAKEFRR QRLDNRELGI TPNLTLLDQL DDEKVRLNLN IFKDSLAYDI
IFEISHKVNN AIAAKVHAGL GEQALLRRHP LPTLQKMETF VRKATNLGFK IDTTTSSTLQ
KSILSIEDPV KRKCIETLLY KCMSRGKYYV AGKQDPDSYG HYYYNLPLYT HFTAPLRRYA
DLIVHRQLKA VLNKVEEEKD LDSLKATADY CNFKKDCAAN AQAQAIHLLL SQTINEVSEN
AGQLLCMGTV LQVYESSFDV FIPELGVEKR VHGDQLPLVK AEFDKATRTL ELTWEKGVDS
ATYIPADEQS SLSYRNSIKN KYRTSALQAA KLQNKTLLEK NNVTTDSIIE KLARLNLEPP
SLSIPALKSS SGTSENEPTQ GKESTRSMPS SPTQSEFPKN TRTNSSSLLQ NDASADSFNG
LAPYLQDTIT RPGNVQVIKE LNQVPVLIRA EIGMALPCLT VRVLNPFAEE Q
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