Gene PICST_81403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_81403 
Symbol 
ID4837169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp1878465 
End bp1879436 
Gene Length972 bp 
Protein Length253 aa 
Translation table12 
GC content43% 
IMG OID640388484 
Productpredicted protein 
Protein accessionXP_001383130 
Protein GI126133210 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0638] 20S proteasome, alpha and beta subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0672955 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
AATTGCGTTG TCTTTGGCTC GATCTTTAGA GGAAGACCCA CAAACATCGT AGAAACGACT 
ACTGGATTTC ATTTTGCTGG ATTTTCAGAA GACAAATTTG AAAAATCTCA AAATAGTCTG
AACTTTTGTA TTCAATTTAG AAGTCCCAAT CTCATAATAC ACTAATATGT CCAGAAGATA
CGACTCCAGA ACAACCATTT TCTCGCCTGA GGGCAGATTG TACCAAGTGG AATATGCGCA
AGAGGCAATT TCCATGGCTG GGACTGCCAT TGGTATCTTG TCTACTGAAG GAGTGGTGTT
GGCCTGTGAG AAAAAAGTCA CATCCAAGTT GTTGGATAAC GATGGTTCGG CAGAAAAGTT
ATACGTCATC AACGACAACA TGATATGTGC TGTAGCTGGG ATGACTGCTG ATGCCTCTAT
CTTGGTGAAC AACGCCCGTG TCAATGCGCA GAGCTACTTG AAAACTTACA ACGAAGAGAT
TCCTTGTGAA ATCTTGATCA AACGAGTCTG TGACATCAAG CAGGGATACA CACAACACGG
TGGTTTAAGA CCGTTTGGTG TAAGTTTTTT GTATGCGGGA TATGACGACC GCTATCAGTT
CCAGTTGTTC ACGTCGAATC CTTCAGGAAA CTACTCAGGC TGGAAGGCTA CCAGCATTGG
AGCCAACAAC TCTGCAGCCC AGACGTTGTT GAAAAAGGAC TACAAGGACG ACTTGTCGTT
GAAGGAAGCC TGTGAATTGG CCATCAAGGT CTTGTCGAAG ACCATGGACT CGTCCAACTT
GAACAGCGAA AAGTTGGAGT TTGCTACCTT GAGCTTGTCT AAAATTAATC CCGGTCAGGT
GATCCATAAG ATCTGGAAGG ATTCTGATAT AGACTCGTTG ATCAAGGAGT CAGGTGTTTT
GGACGACAAA AATACCGACG ACGACTAGAT ACATACGAAT AAACTAACAA AGGAATAAAG
TAGAAATATG TT
 
Protein sequence
MSRRYDSRTT IFSPEGRLYQ VEYAQEAISM AGTAIGILST EGVVLACEKK VTSKLLDNDG 
SAEKLYVIND NMICAVAGMT ADASILVNNA RVNAQSYLKT YNEEIPCEIL IKRVCDIKQG
YTQHGGLRPF GVSFLYAGYD DRYQFQLFTS NPSGNYSGWK ATSIGANNSA AQTLLKKDYK
DDLSLKEACE LAIKVLSKTM DSSNLNSEKL EFATLSLSKI NPGQVIHKIW KDSDIDSLIK
ESGVLDDKNT DDD